Burkholderia sp. PAMC 28687: AX768_14275
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Entry
AX768_14275 CDS
T05699
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
bui
Burkholderia sp. PAMC 28687
Pathway
bui03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bui00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AX768_14275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bui03019
]
AX768_14275
03400 DNA repair and recombination proteins [BR:
bui03400
]
AX768_14275
Enzymes [BR:
bui01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AX768_14275
Messenger RNA biogenesis [BR:
bui03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AX768_14275
DNA repair and recombination proteins [BR:
bui03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AX768_14275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
HHH
HHH_5
Motif
Other DBs
NCBI-ProteinID:
AMM15097
LinkDB
All DBs
Position
1:complement(3050426..3052273)
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AA seq
615 aa
AA seq
DB search
MSRSLEILKEVFGYPAFRGQQGDIVEHVAAGGDSLVLMPTGGGKSLCYQIPALLRREAGF
GAGIVVSPLIALMQDQVAALSEVGVRAACLNSTLTGAEAAATERALRNGEIDLLYVAPER
LMTPRFLDLIESVRIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPSVPRIALTATAD
AITRDEIVHRLALDDARIFVSSFDRPNIRYRIVEKDNARAQLLDFIRAEHTNPDKTTDAG
VIYCLSRRKVEETADWLKSQGVRALPYHAGMEYETRQRHQEMFKREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESDADD
THKRVQGGKLDALLGLCEAASCRRVRLLGYFGEASQPCGNCDTCLEPPESWNATREAQMA
LSCVYRAYKASGFHFGAGHLIDILRGSRSEKLLQRGHEKLSTFGLGAALSEQEWRAVFRQ
LVAFGYLAVDHDGFGALVLTEASKAVLKGEQNVTLRKYVKPTRTRQSSSRTGERADPTAG
MSPRIKARWERLRAWRASMAKSDGVPAYVIFHDATLAEIARNEPDSIEDLRQIPGIGARK
LDRFGDELLEVVGAD
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgttcgctcgaaattctcaaggaagtatttggctatcccgcattccgggggcag
cagggcgatatcgtcgaacatgtagctgccggcggggattcgctcgtgctcatgccaacc
ggcggcgggaagtcgttgtgttaccagattcccgctttgttaaggcgcgaagcggggttc
ggcgcggggatcgtcgtgtcaccgttgatcgcgctgatgcaggatcaggttgccgctctc
agcgaagtcggcgtgcgcgctgcttgcctgaattccacgctgaccggtgccgaagccgcg
gcgaccgagcgcgcgctgcgcaatggcgagatcgacctgttgtacgtcgcgccggaacgc
ttgatgacgccacggtttctcgatctgatcgagagcgtgcgcatcggtttgtttgccatc
gacgaagcgcattgtgtgtcgcaatggggccacgattttcgccctgaatacattcagttg
tcggtgctgcacgagcgctttccatcggtgccccggattgcactgacggccactgccgac
gccattacgcgcgatgaaatcgtgcatcgactcgctctggatgacgcaaggattttcgtc
tcgagcttcgaccggccgaacatccgataccgcatcgtggagaaggacaacgcgcgtgcg
cagctgctcgatttcatccgcgcggagcacaccaatcccgacaaaaccacggacgccggc
gtgatctactgtctgtcgcggcgaaaggtcgaagaaaccgcggactggctgaaaagccag
ggcgtacgagcgctgccttaccacgcgggcatggagtacgaaacacgtcagcggcaccag
gaaatgttcaagcgcgaagagggtatcgtaatgtgcgcgacgattgctttcggcatgggt
atcgacaaacctgatgtgcgtttcgtcgcgcatctggacctgccaaagagcgtggagggc
tactaccaggaaaccggccgagcgggccgcgacggcatgccggcgaacgcgtggatggcc
tacggtcttggcgacgttgtccagcagcgcaagatgatcgacgaatcagatgccgacgat
acccacaagcgcgtgcagggcggcaagctcgacgcgctgctaggactgtgcgaagcggcg
tcatgccggcgcgtgcgcttgctcggctatttcggcgaagccagccagccttgcggaaac
tgcgatacgtgcctcgagccgcccgaatcgtggaacgcgacgcgcgaggcgcagatggcg
ctgtcctgtgtgtatcgggcgtacaaggctagtgggtttcactttggcgcaggacatctg
atcgatatcctgcgtggcagccgttcggagaagttgctccagcgcggtcacgaaaaactc
tctacgttcggactcggcgccgcgctatcagaacaggaatggcgcgctgtttttcgtcag
ttggtcgcgtttggctacctcgccgtagaccacgatggtttcggcgccctcgtcctcacc
gaggcgagtaaagccgtgttgaagggcgagcagaacgttacgctgcgcaaatatgtaaag
ccgacgcgcacccgccagtcttccagccggacgggcgagcgcgccgatccgaccgccggc
atgtcgccgcgcatcaaggctcgttgggagcggctgcgcgcctggcgcgcgagcatggcg
aaaagcgacggcgtgccggcatatgtcatttttcatgacgcaacgctggcggagatcgcg
cgcaacgagccggattccatcgaggatttgaggcagattccgggtatcggggcgcgcaag
ctcgatcggtttggcgacgaattgctcgaagtggtcggcgctgattag
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