Stenotrophomonas maltophilia JV3: BurJV3_1190
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Entry
BurJV3_1190 CDS
T01596
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BurJV3_1190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buj03400
]
BurJV3_1190
Enzymes [BR:
buj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BurJV3_1190
DNA repair and recombination proteins [BR:
buj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BurJV3_1190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
AAA_30
Cas3-like_C_2
SWI2_SNF2
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AEM50522
LinkDB
All DBs
Position
complement(1337846..1341310)
Genome browser
AA seq
1154 aa
AA seq
DB search
MSRTSYPAPPLPRAGQLRAWWRAPASPTALAWYLAQAARAHDAPLLVIARDNHGANQLEA
DLQTLIGGDPSLPVVAFPDWETLPYDRFSPHPDIISQRLAALHRLPALKRGLVIVPVQTL
LQQLAPRSYVIGGSFDLKVGQRLDLEAEKRRLESAGYRNVPQVMDPGDFAVRGGLLDVYP
MGADEPLRVELLDEDIDSIRAFDPESQRSLDKVEAVHMLPGREVPMDEASIARVLATLRE
RFDVDTRRSSLYQDLKSGLAPAGVEYYLPLFFERTATLFDYLPDGSLPVVCAGAGEAAEA
FWAQTGERYEQRRHDVERPLLPPSALYLSSELLRERLNDAPRIEVWAADHARIADAHALG
DQPLPPLPVAAREAPAGDALKSFLGHYPGRVLIAADSPGRREALLEVLQAAELKPPVAAD
LPSFLADDARFAIAVAPLEDGFALDDPRIAVLTERQLFPERAGSTRRTRRAGREPEAIIR
DLGELTEGAPIVHEDHGVGRYRGLIAMDVGGMPGEFLEIEYAKGDRLYVPVAQLHLISRY
SGASAETAPLHSLGGEQWSKAKRKAAEKVRDVAAELLEIQARRQARAGLALQVDRAMYEP
FAAGFPFEETPDQLAAIDATLRDLASSQPMDRVVCGDVGFGKTEVAVRAAFAAASAGKQV
AVLVPTTLLAEQHYRNFRDRFADYPLKVEVLSRFKTTKEIKAELEKVAAGTIDVIVGTHR
LLQPDVKFKDLGMVIVDEEQRFGVRQKEALKALRANVHLLTLTATPIPRTLNMAMAGLRD
LSIIATPPPNRLAVQTFITQWDNALLREAFQRELARGGQLYFLHNDVESIGRMQRELSEL
VPEARIGVAHGQMPERELEKVMLDFQKQRFNVLLSTTIIESGIDIPNANTIIINRADRFG
LAQLHQLRGRVGRSHHRAYAYLVAPDRRSITPDAEKRLEAIASMDELGAGFTLATHDLEI
RGAGELLGEDQSGQMAEVGFSLYTELLERAVRSIKQGKLPDLDAGEEVRGAEVELHVPAL
IPEDYLPDVHTRLTLYKRISSARDSDALRELQVEMIDRFGLLPDAAKHLFAIAELKLKAN
TLGIRKLDLGENGGRIVFESKPNIDPMAVIQLIQKQPNLYAMEGPDKLRIKHPLPLPEDR
FNAARALLTTLAPG
NT seq
3465 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgtacctcataccccgccccgccgctgccgcgcgccggccagctccgcgcctgg
tggcgcgcccccgcatcgccgaccgccctggcctggtacctggcccaggccgcgcgtgcg
catgacgccccgctgctggtgatcgcccgtgacaaccacggtgccaaccagctcgaagcc
gacctgcagaccctgatcggcggcgatccgtcgctgccggtggtcgccttcccggactgg
gaaaccctgccctacgaccgcttcagcccgcatccggacatcatctcgcagcgcctggct
gccctgcaccgcctgcccgcgctgaagcgtggcctggtgatcgtgccggtgcagaccctg
ctgcagcagctggccccgcgcagctacgtgatcggcggcagtttcgacctgaaagtcggc
cagcgcctggatctggaagccgagaagcgccgcctggaaagcgccggctaccgcaacgtg
ccgcaggtgatggacccgggtgacttcgccgtgcgcggcggcctgctcgacgtgtacccg
atgggtgccgacgagccgctgcgggtggagctgctggacgaggatatcgactcgatccgt
gcctttgacccggaaagccagcgttcgctggacaaggtcgaggcggtgcacatgctgccg
ggccgcgaagtgccgatggacgaggccagcattgcccgcgtgctggccacgctgcgcgag
cgcttcgatgtcgatacccggcgcagttccttgtaccaggacctgaagtccgggctggcg
ccggccggcgtcgagtactacctgccgctgttcttcgaacgcaccgcgaccctgttcgac
tacctgcccgacggcagcctgccggtggtctgcgccggtgccggcgaagccgccgaggca
ttctgggcgcagaccggtgagcgctacgaacaacgccgccacgacgtcgaacggccgctg
ctgccgccgtcggcgctgtacctgtcgtcggagctgctgcgcgagcgcctgaacgatgcc
ccgcgcatcgaggtatgggccgccgaccatgcacgcatcgccgacgcgcacgcgctgggc
gaccagccgctgccgccgctgccggtggccgcgcgcgaggcgcccgctggcgacgcgctg
aaatccttcctcggccactatccgggccgggtgctgatcgccgccgattcgcccggccgc
cgcgaggcgctgctggaagtgctgcaggccgccgagttgaagccgccggtggcggccgac
ctgcccagcttcctcgccgacgatgcgcgcttcgcgatcgcggtggcgccgctggaagat
ggcttcgcactggacgatccgcgcatcgcggtgctgaccgagcgccagctgttccccgag
cgcgccggcagcacccgccgcacgcgccgggccggccgcgagccggaagcgatcatccgc
gaccttggcgaactgaccgaaggcgcgccgatcgtgcacgaggaccatggcgtcggccgc
tatcgtggcctgatcgcgatggatgtcgggggcatgcccggcgagttcctcgaaatcgaa
tatgccaagggcgaccgtctgtatgtgccggtcgcccagctgcacctgatcagtcgctac
tccggtgcgtcggcggaaaccgcgccgctgcattcgctgggtggcgaacagtggagcaag
gccaagcgcaaggccgccgagaaggtgcgcgacgtcgccgccgagctgctggagatccag
gcccgccgccaggcgcgtgctggtctggcactacaggtggaccgcgcgatgtacgagccg
ttcgccgccggtttcccgttcgaggaaacgccggaccagctggccgcgatcgacgccacc
ctgcgcgacctggccagcagccagccgatggaccgcgtggtctgcggcgacgtcggcttc
ggcaagaccgaggtggcggtgcgtgcggcattcgcggccgccagtgccggcaagcaggtg
gccgtgctggtgccgaccacgctgctggccgaacagcattaccgcaacttccgcgaccgc
ttcgccgattacccgctgaaggtcgaagtgctgtcgcgcttcaagaccaccaaggaaatc
aaggccgagctggaaaaggtcgccgccggcaccatcgacgtcatcgtcggtacccatcgc
ctgctgcagccggacgtgaagttcaaggacctgggcatggtcatcgtcgacgaggagcag
cgtttcggcgtgcgccagaaggaggcactgaaggcgctgcgcgccaacgtgcacctgctg
accctgaccgccacgccgatcccgcgcaccttgaacatggccatggccggcctgcgcgac
ctgtcgatcatcgccacgccgccgccgaaccggctggcggtgcagaccttcatcacccag
tgggacaacgcgctgctgcgcgaagccttccagcgtgagctcgcgcgtggtggccagctg
tacttcctgcacaacgacgtggaaagcatcggccgcatgcagcgcgagctgtccgagctg
gtgcccgaggcacgcatcggcgtcgcccacgggcagatgcccgagcgcgagctggaaaag
gtgatgctggatttccagaagcagcgcttcaacgtactgctgtcgaccacgatcatcgag
tcgggcatcgacatccccaacgccaacaccatcatcatcaaccgcgccgaccgcttcggc
ctggcccagctgcaccagctgcgtggccgcgtcggtcgttcgcaccaccgcgcctacgcc
tacctggtggcgcccgaccgccgttcgatcaccccggatgcggagaagcgcctggaagcg
atcgcgtcgatggacgaactcggcgccggcttcaccctggccacccacgatctggagatc
cgcggcgccggcgaactgcttggcgaggaccagagcgggcagatggccgaggttggcttc
agcctgtacaccgaactgctggagcgcgcggtgcgcagcatcaagcagggcaagctgccc
gacctggatgccggcgaggaagtacgcggtgccgaggtcgaactgcatgtgccggcgctg
attccggaagactacctgccggacgtgcacacccgcctgaccctgtacaagcgcatatcc
agcgcgcgcgacagcgatgcgctgcgcgagctgcaggtggagatgatcgaccgcttcggc
ctgctgccggatgcggccaagcacctgttcgccatcgccgagctgaagctgaaagccaat
acgctgggcatccgcaagctcgacctgggcgagaacggtggccgcatcgtgttcgaatcc
aagccgaacatcgacccgatggcggtgatccagctgatccagaaacaaccgaacctgtac
gccatggaagggcctgacaagctgcgcatcaagcacccgctgccgttgccggaagaccgc
ttcaacgcggcccgcgcccttctgaccaccctcgccccgggttga
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