Stenotrophomonas maltophilia JV3: BurJV3_3131
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Entry
BurJV3_3131 CDS
T01596
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BurJV3_3131
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buj03019
]
BurJV3_3131
03400 DNA repair and recombination proteins [BR:
buj03400
]
BurJV3_3131
Enzymes [BR:
buj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BurJV3_3131
Messenger RNA biogenesis [BR:
buj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
BurJV3_3131
DNA repair and recombination proteins [BR:
buj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
BurJV3_3131
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
PSD2
Motif
Other DBs
NCBI-ProteinID:
AEM52449
LinkDB
All DBs
Position
3465788..3467593
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AA seq
601 aa
AA seq
DB search
MASRPAHDLLQRVFGYDDFRGPQQDIVEHVAAGHDALVLMPTGGGKSLCYQVPALLRDGC
GIVISPLIALMQDQVEALRQLGVRAEYLNSTLDAETAGRVERELLAGELDMLYVAPERLL
TGRFLSLLSRSQIALFAIDEAHCVSQWGHDFRPEYRQLTVLHERWPQIPRIALTATADPP
TQREIAERLDLQEARHFVSSFDRPNIRYTVVQKDNARKQLTDFLRGHRGEAGIVYCMSRR
KVEETAEFLCGQGFNALPYHAGLPPDVRANNQRRFLREDGIVMCATIAFGMGIDKPDVRF
VAHTDLPKSMEGYYQETGRAGRDGEAAEAWLCYGLGDVVLLKQMIEQSEAGEERKQLERA
KLDHLLGYCESMQCRRQVLLAGFGETYPQPCGNCDNCLTPPASWDATIPAQKALSCVYRS
GQRFGVGHLIDILRGSENEKVKQQGHDKLSTYAIGRDLDARTWRSVFRQLVAASLLEVDS
EGHGGLRLTDASRDVLTGRRQISMRRDPASSTSGRERSAQRTGLSVLPQDLALFNALRGL
RAELAREQNVPAFVIFHDSTLRNIAEQRPTSLDALARVGGIGGTKLSRYGPRLVEIVREE
G
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcccgtcccgcgcacgacctgctccaacgcgtctttggttacgacgatttccgt
ggtccccagcaggacatcgtggagcatgtggctgccggtcacgatgccctggtgctgatg
cccaccggcggcggcaaatcgctgtgctaccaggtcccggccctgctgcgtgacggttgc
ggcattgtcatctcgccgctgatcgcactgatgcaggaccaggtcgaggcgctgcgccag
ctcggcgtgcgtgccgagtacctgaactcgaccctggacgccgagaccgccggccgcgtc
gagcgcgagctgctcgcgggtgagctggacatgctctatgtcgcccccgagcggctgctg
accggtcgcttcctgtcgctgctgtcgcgcagccagatcgccctgttcgccatcgacgaa
gcacactgcgtgtcgcagtggggccatgatttccgccccgagtaccgccagctgaccgtg
ctgcacgaacgctggccacagatcccgcgcatcgcgctgaccgcgaccgccgatccgccg
acccagcgcgagatcgccgagcgcctcgatctgcaggaagcgcgtcacttcgtcagctcc
ttcgaccgccccaacatccgctacaccgtggtgcagaaggacaacgcccgcaagcagctg
accgatttcctgcgcggccaccgtggcgaggccggcatcgtctactgcatgtcgcggcgc
aaggtcgaggagaccgctgaattcctctgtggacagggcttcaacgccctgccctaccat
gccggcctgccgccggacgtgcgcgcgaacaaccagcgccgtttcctgcgcgaggacggc
atcgtgatgtgcgccaccatcgccttcggcatgggcatcgacaagccggacgtgcgcttc
gtggcgcataccgacctgcccaagtcgatggagggctactaccaggaaaccggccgcgcc
ggccgcgatggtgaagccgccgaagcgtggctgtgctacggcctgggtgatgtggtgctg
ctcaagcagatgatcgagcagtccgaggccggtgaagagcgcaagcagctggagcgggcc
aagctcgaccacctgctgggctactgcgaatccatgcagtgccgccgccaggtgctgctg
gccggcttcggcgagacctacccgcagccctgcgggaactgcgacaactgcctgacgccg
ccggcctcctgggacgccaccattccggcacagaaggcgctgagctgcgtctaccgcagc
ggacagcgcttcggtgtcggccacctgatcgacatcctgcgtggcagcgagaacgagaag
gtgaagcagcagggccatgacaagctcagcacctatgcgatcggccgcgacctggatgca
cgcacctggcgcagcgtgttccgccagttggtcgccgccagcctgctggaagtggacagc
gagggccacggtggcctgcgcctgaccgatgccagccgcgacgtgctgaccggccgtcgc
cagatcagcatgcgccgcgatcccgccagcagcaccagtggccgcgagcgcagtgcgcag
cgcaccggcttgtcggtgctgccgcaggatctggccctgttcaacgccctgcgcggcctg
cgtgccgaactggcccgcgaacagaacgtaccggcgttcgtgatcttccacgacagcacc
ctgcgcaacattgccgaacagcgcccgaccagcctggatgcgctggcccgggtcggcggc
atcggtggcaccaagctgagccgctacggcccgcgcctggtcgagattgtgcgcgaagaa
ggttga
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