Stenotrophomonas maltophilia JV3: BurJV3_3940
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Entry
BurJV3_3940 CDS
T01596
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
buj
Stenotrophomonas maltophilia JV3
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
buj03016
]
BurJV3_3940
Enzymes [BR:
buj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
BurJV3_3940
Transfer RNA biogenesis [BR:
buj03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
BurJV3_3940
Prokaryotic type
tRNA splicing ligases
BurJV3_3940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Hexapep
Motif
Other DBs
NCBI-ProteinID:
AEM53252
LinkDB
All DBs
Position
4357308..4358528
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AA seq
406 aa
AA seq
DB search
MDTQHNYQWLHAEGTTPIKGWVNGVPLEAQAHEQLRNIAAIPFVGPWVAVMPDVHLGKGA
TVGSVIPTRGAIIPAAVGVDIGCGMAAVRTTLRANDLPDDLRQLRNSIERSIPVGNGRGG
EHQRMPDSIHTRLVQSGLAAGLEKIKDRHRRIRTDKLDRQLGTLGGGNHFIELCLDETDT
VWVMLHSGSRGTGNLIGTYFIEKAREELARRVLGFHLPDKDLAFFMEGEPLFDDYVEAVS
WAQDYARQNREAMMSRVLAEMRHRLPKFQLAAMAVNCHHNYVQKETHHGQELLVTRKGAV
SARECELGIIPGSMGTRSYIVRGKGNADSFHSCSHGAGRVLSRGAARQQITLAQHREATA
HVECRKDSGVLDESPAAYKSIDDVMAAQLDLVDVVHTLRQVLCVKG
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggacactcaacacaactatcaatggctgcacgccgagggcaccacgccgatcaagggc
tgggtcaacggtgtgccgctggaagcgcaggcgcatgagcagctgcgcaacatcgccgcg
atcccgttcgtcgggccgtgggtggccgtgatgccggacgtgcacctgggcaagggcgcg
accgtgggctcggtgatcccgacccgcggtgcgatcatcccggccgcggtcggcgtcgac
atcggctgcggcatggccgccgtgcgtaccacgctgcgcgccaatgacctgcccgatgac
ctgcggcagctgcgcaacagcatcgagcgcagcatcccggtcggcaacgggcgcggcggc
gagcatcagcgcatgcccgacagcatccacacccggctggtgcagtccgggctggccgcc
ggcctggagaagatcaaggacaggcaccgcaggatccgcaccgacaagctcgaccgccag
ctgggtacgctgggcggcggcaatcacttcatcgaactgtgcctggacgagacggacacg
gtgtgggtgatgctgcacagcggatcacgtggcaccggcaacctgatcggcacgtacttc
atcgagaaggcgcgcgaggaactggcccggcgcgtgctcggcttccacctgccggacaag
gacctggcgttcttcatggaaggcgagccgctgttcgatgactacgtcgaagcggtgtcg
tgggcgcaggactatgcccggcagaaccgtgaggcaatgatgtcgcgggtgctggccgaa
atgcgccaccggttgccgaagttccagctggctgcgatggcggtgaactgccaccacaac
tacgtgcagaaggagacgcaccacggccaggaactgctggtgacgcggaagggtgcagtg
agtgcgcgcgagtgcgagctcggcatcattcccggcagcatgggcacgcgcagctacatc
gtgcgtggcaagggcaacgcagacagcttccacagctgcagccacggtgccggccgggta
ttgagccgtggcgctgcgcgccagcagatcacgctggcccagcaccgcgaggccaccgcg
cacgtggaatgccgcaaggacagcggcgtgctggatgagtcgccggccgcgtacaagtcg
atcgacgacgtgatggccgcgcagctggacctggtcgacgtggtgcataccctgcgccag
gtgctgtgcgtgaagggataa
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