Stenotrophomonas maltophilia JV3: BurJV3_3985
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Entry
BurJV3_3985 CDS
T01596
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
buj
Stenotrophomonas maltophilia JV3
Pathway
buj03030
DNA replication
buj03410
Base excision repair
buj03420
Nucleotide excision repair
buj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
buj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BurJV3_3985
03410 Base excision repair
BurJV3_3985
03420 Nucleotide excision repair
BurJV3_3985
03440 Homologous recombination
BurJV3_3985
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buj03032
]
BurJV3_3985
03400 DNA repair and recombination proteins [BR:
buj03400
]
BurJV3_3985
Enzymes [BR:
buj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BurJV3_3985
DNA replication proteins [BR:
buj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BurJV3_3985
DNA repair and recombination proteins [BR:
buj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
BurJV3_3985
NER (nucleotide excision repair)
GGR (global genome repair) factors
BurJV3_3985
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
AEM53297
LinkDB
All DBs
Position
complement(4406421..4409195)
Genome browser
AA seq
924 aa
AA seq
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MSRLVLIDGSSYLYRAFHALPPLSNAQGEPTGALFGVVNMLRSTLKERPAYVAFVVDAPG
KTFRDDLYEQYKANRPPMPDELRSQVEPMCRIVEALGISILRIPGVEADDVIGTLALQGL
AQDLKVTISTGDKDFAQLVRPGIELVNTMTGSRMDSDAAVMEKFGVRADQIIDLLALMGD
TVDNVPGVEKCGPKTAAKWLAEYQHLDGVMAAAPTMKGKIGENLRAALERLPLNRELVTI
RTDVELDASPTTLALREQDVPALTELYTRYGFTQALKELGAPLPAPAAASEATPSLRGTA
AGFARGSAEAPAAGTLDPALAAPGEYETVLTSEQLQAWVERLQQADLISFDTETDALDAM
RAHLVGVSLAVEPGKAAYIPVGHDYPGAPAQLPMQQVLDALRPVLQDPAKKKLGQHGKYD
LHVLRRHGVDVQGYHDDTMLESFVLNSTATRHDMDSLALRYLGYSTIKFEDVAGKGAKQI
PFSQVGIDEASRYAAEDADVTLRLHRALQPQLLAEPALDSVYRDIEMPLVPVLTTIEANG
VRIDTDELRRQSQDLSSRMLAAQQKATELAGRSFNLDSPKQLQAVLFDELKLPAVVKTPK
GQPSTNEEALEAIADQHELPRVILDYRGLAKLRSTYTDKLPEMVNPDTGRVHTSYHQSGA
ATGRLSSSDPNLQNIPIRTEDGRRIRRAFIAPEGFQLLAADYSQIELRIMAHLSEDPGLV
RAFEQGADVHRATAAEVFGRTLEEVTPNERRAAKAINFGLMYGMSAFGLARNLGIDRGQA
QDYVALYFSRYPGVRDFMERMRQQARDQGYVETLFGRRLYLNDIHARNQGLRAGAERAAI
NAPMQGTAADIIKRAMVDVDQWLRDSGAPARMILQVHDELVFETESSFVEDLRLQVVERM
SQAAKLRVPLVVDTGIGNNWDEAH
NT seq
2775 nt
NT seq
+upstream
nt +downstream
nt
atgagcagattagtcctgatcgacgggtccagttacctgtaccgcgcgttccacgcgctg
ccgcccctgtccaatgcacagggtgaacccaccggcgcgctgttcggcgtggtcaacatg
ctgcgctcgacgctgaaggagcgcccggcctacgtggcgttcgtggtcgacgcgccgggc
aagaccttccgcgacgacctgtacgagcagtacaaggccaaccgcccgccgatgcccgat
gagctgcgcagccaggtcgagccgatgtgccgcatcgtcgaggcgctgggcatcagcatc
ctgcgcatccccggcgtggaagccgacgatgtgatcggcacgctggccctgcagggcctg
gcgcaggacctgaaggtgaccatttccaccggcgacaaggactttgcccagctggtgcgc
ccgggcatcgagctggtcaacaccatgaccggcagccgcatggattcggacgcggcggtg
atggagaagttcggcgtgcgcgccgaccagatcatcgacctgctggcgctgatgggcgac
accgtcgacaacgtgccgggcgtggagaagtgcgggccgaagaccgctgccaagtggctg
gccgagtaccagcacctggacggggtgatggcggccgcgccgaccatgaagggcaagatc
ggcgagaacctgcgcgccgcgctggagcgcctgccgctgaaccgcgagctggtgaccatc
cgcaccgacgtggagctggacgccagcccgaccacgctggccctgcgcgagcaggacgtg
ccggcgctgaccgagctgtatacgcgctacggcttcacccaggcgctgaaggaactgggt
gcgccgctgccggcgccggctgccgccagcgaggccaccccgagcctgcgcggtaccgcg
gcaggcttcgcccgtggcagcgccgaggcaccggctgccggcacgctggatccggcgctg
gccgcaccgggtgaatacgagaccgtgctgaccagcgagcagctgcaggcctgggtcgag
cgcctgcagcaggccgatctgatcagcttcgataccgaaaccgatgcgctggacgcgatg
cgcgcgcacctggtcggtgtcagcctggcggtcgagccgggcaaggccgcctacattccg
gtcggccacgattacccgggtgcaccggcgcagctgccgatgcagcaggtgctggatgcg
ctgcgcccggtgctgcaggacccggcgaagaagaagctgggccagcacggcaagtacgac
ctgcatgtgctgcgccgccacggcgtggacgtgcagggctaccacgacgacaccatgctc
gagagcttcgtgctcaattccaccgccacccgccacgacatggattcgctggccctgcgt
tacctgggctacagcaccatcaagttcgaggacgtggccggcaagggcgccaagcagatt
ccgttctcgcaggtgggcatcgacgaagccagccgctatgcggccgaggacgccgacgtc
accctgcgcctgcaccgcgcgctgcagccgcagctgctggccgagccggcgctggacagc
gtgtaccgcgacatcgagatgccgctggtgccggtgctgaccacgatcgaagccaatggc
gtgcggatcgacaccgacgaactgcgccggcagagccaggacctgtcctcgcgcatgctg
gccgcacagcagaaggccaccgagctggccggccgcagcttcaacctggattcgcccaag
cagctgcaggcggtgctgttcgacgagctgaagctgccggcggtggtgaagaccccgaag
ggccagcccagcaccaatgaagaggcactggaggcgattgccgaccagcacgagctgccg
cgggtgatcctggactaccggggcctggccaagctgcgcagcacctacaccgacaagctg
ccggagatggtcaacccggacaccggccgggtgcataccagctatcaccagtccggtgcc
gccaccggccgcctgtcctcgtcggacccgaacctgcagaacatcccgatccgcaccgag
gacggccgccgcatccgccgcgcgttcatcgccccggagggcttccagctgctggcggcc
gactattcgcagatcgagctgcggatcatggcccacctgtccgaggacccgggcctggta
cgtgccttcgagcagggcgccgacgtgcaccgtgccaccgctgccgaggtgttcgggcgc
acgctggaggaggtgaccccgaacgagcgccgtgccgccaaggcgatcaacttcggcctg
atgtacggcatgagcgccttcggactggcccgcaacctgggcatcgaccgtggccaggcg
caggactacgtggcgctgtacttcagccgctacccgggcgtgcgcgacttcatggagcgg
atgcgccagcaggcccgtgaccagggctacgtggaaaccctgttcggccgtcgcctgtac
ctgaacgacatccacgcccgcaaccagggcctgcgtgctggtgctgaacgtgcggcgatc
aacgcgccgatgcagggcaccgccgccgacatcatcaagcgcgcgatggtggacgtggac
cagtggctgcgtgacagtggggcaccggcgcggatgatcctgcaggtgcacgatgaactg
gtgttcgaaaccgaaagcagtttcgtggaagacttgcgtttgcaggtggtggagcgcatg
tcgcaagcggccaaactgcgggtgccgctggtggtcgataccggcatcggcaacaactgg
gacgaagcgcactga
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