Burkholderia sp. KJ006: MYA_0263
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Entry
MYA_0263 CDS
T02110
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
buk
Burkholderia sp. KJ006
Pathway
buk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYA_0263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buk03019
]
MYA_0263
03400 DNA repair and recombination proteins [BR:
buk03400
]
MYA_0263
Enzymes [BR:
buk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MYA_0263
Messenger RNA biogenesis [BR:
buk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
MYA_0263
DNA repair and recombination proteins [BR:
buk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MYA_0263
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
RecQ_Zn_bind
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
AFJ84632
UniProt:
I2DJ06
LinkDB
All DBs
Position
1:298469..300376
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AA seq
635 aa
AA seq
DB search
MCGRVVKIAVILPLSYFSFMSRALEILDEVFGYSAFRGQQGEIVEHVAGGGDCLVLMPTG
GGKSLCYQIPALLRREVGQGAGIVVSPLIALMQDQVAALREVGVRAAYLNSTLSGAEAAA
TERALREGEIDLLYVAPERLMTGRFLELLERARIGLFAIDEAHCVSQWGHDFRPEYIQLS
VLHERFPSVPRIALTATADAITRDEIIHRLALDDARVFVSSFDRPNIRYRIVEKDNARAQ
LLDFIRAEHTNADGTTDAGVVYCLSRRKVEETAEWLKAQGVRALPYHAGMEFEVRQKHQE
MFQREEGVVMCATIAFGMGIDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGLPANAWMAY
GLGDVVQQRKMIDESDADDAHKRVQTSKLDALLGLCETISCRRVRLLNYFGEASEPCGNC
DTCLEPPDSWDATREAQMALSCVFRAQRASGFNFGASHLIEILRGARTEKVLQRGHDQLS
TFGIGAALSEPEWRAIFRQLVAYGYLAVDHGGFGALVLTEAAKPVLKNEEKVTLRRYVKP
QRSSRQSSSRSGTRVDPTAGMGARERARWDALRAWRAETAKSDGVPAYVIFHDATLAEIA
RNAPETIEDLRHIPGMGVRKLERFGDEIIDVVESA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
ttgtgcgggcgggttgttaaaattgcggtcatccttccgctgtcctatttctcattcatg
tcccgcgccctcgaaatcctcgacgaagtcttcggttattccgcctttcgcggccagcag
ggcgagatcgtcgaacacgtcgccggcggcggcgattgcctcgtgctgatgccgacgggc
ggcggcaagtcgctgtgctaccagattcctgcgctgctgcgccgcgaggtcgggcagggc
gccggcatcgtcgtgtcgccgctgatcgcgctgatgcaggaccaggtcgccgcgctgcgc
gaagtcggcgtgcgcgccgcgtacctgaactcgacgctgtccggtgccgaggccgccgcg
accgagcgtgcgctgcgcgaaggcgagatcgatctgctgtacgtcgcgccggagcgtctg
atgaccggccgcttcctcgagctgctcgagcgcgcgaggatcggcctgttcgcgatcgac
gaggcgcactgcgtgtcgcagtgggggcacgatttccggcctgaatacatccagctgtcg
gtgctgcacgagcgtttcccgtcggtgccgcgcatcgcgctgacggccaccgccgacgcg
atcacgcgcgacgagatcatccatcgtctcgcgctcgacgatgcgcgcgtgttcgtgtcg
agcttcgaccgcccgaacatccgctaccggatcgtcgaaaaggacaacgcgcgcgcgcag
ctgctcgacttcatccgcgccgaacacacgaacgcggacggcacgaccgacgcgggcgtc
gtctactgcctgtcgcgtcgcaaggtcgaggagacggccgaatggctgaaggcgcaaggc
gtgcgcgcgctgccgtatcacgcggggatggagttcgaggtgcggcaaaagcaccaggaa
atgttccagcgcgaagaaggcgtcgtgatgtgcgcgacgatcgcgttcggcatgggcatc
gacaagcccgacgtgcgcttcgtcgcgcacctcgatttgccgaagagcgtcgagggctac
taccaggaaaccggccgcgccgggcgcgacggtttgccggcgaacgcctggatggcgtac
ggcctcggcgacgtcgtgcagcagcgcaagatgatcgacgaatccgatgcggacgacgcg
cacaagcgcgtgcaaacgtcgaagctcgacgcgctgctcgggctgtgcgagacgatctcg
tgccggcgcgtgcgcttgctgaattacttcggcgaggcgagcgagccgtgcggcaactgc
gatacctgtctcgagccgcccgattcgtgggatgcgacgcgcgaggcgcagatggcgctg
tcgtgcgtgttccgcgcgcagcgcgcgagcggcttcaatttcggcgcgagccatctgatc
gagatcctgcgcggcgcgcgcaccgagaaggtcctgcagcgtggccacgatcaattgagc
accttcgggatcggcgcggcgctgtccgagcccgagtggcgcgcgattttccggcaactg
gtcgcgtacggctatctggccgtcgatcacgggggcttcggcgcgctcgtgctgaccgag
gccgcgaagccggtgctgaagaatgaggagaaggtgacgctgcgccgctacgtgaagccg
cagcgctcctcgcgccagtcgtccagccgcagcggcacgcgcgtcgacccgacggccggc
atgggcgcccgcgagcgggcacgctgggacgcgctgcgtgcatggcgcgcggaaaccgcg
aagtccgacggcgtgccggcgtatgtgatcttccacgacgcgacgctcgccgaaatcgcg
cgcaacgcgccggagacgatcgaagacctgcgccatatccccggcatgggcgtgcgcaag
ctcgaacgcttcggcgacgagatcatcgacgtcgtcgaatcggcgtga
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