Burkholderia sp. KJ006: MYA_1003
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Entry
MYA_1003 CDS
T02110
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
buk
Burkholderia sp. KJ006
Pathway
buk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYA_1003
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buk03019
]
MYA_1003
03009 Ribosome biogenesis [BR:
buk03009
]
MYA_1003
Enzymes [BR:
buk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MYA_1003
Messenger RNA biogenesis [BR:
buk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MYA_1003
Ribosome biogenesis [BR:
buk03009
]
Prokaryotic type
rRNA processing factors
MYA_1003
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AFJ85370
LinkDB
All DBs
Position
1:complement(1058427..1061618)
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AA seq
1063 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTADVKPKQEAAVKGITPER
PAPSPAAPRPAEPVAAAPAPAPAPVAPASGGFIGWLKGLFGMAPAAAPAPAPVAPAPVSE
PAARPARERTEKSEQRGGDRNRNRRGGPQAQGGRDQAAAGRGPRLEREGKEAREGREPRE
AREPREGREPRENREGREGREGREGRGPREGREPRENREAREAREPREPRERAEQLEAGD
AAGRGERQERGERRERGERGERGERRKPTQHAATLETVNRGENHPDEEADQAAAVALPGA
DAAADAEASGEERRRRRRGRRGGRREREEEGAVAEHGVGDEAAVQEVATESSAAAPAHTA
AATAPAAVAAVAAAGAVVAETAVEQHAEAAAPAAVEPQPAPVRVEATPVAPLEPAIAAPA
AATASVAPAAAVEAGPAPVAVSPTDAFEVPAEPAAVEAPQSAPVEHAAPAPVVAVEAAPA
PAEPARVEAAPVEAARVEAAPVETVAAPAPATPAPAAAAPVSAGLEVVLEQAGLVWVNTD
ADKFRAAQEAASRLPRAARVPRERKPLPPADSTPMQQVETSQR
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcgtcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgcgctgcgcgagggccaggagctgatc
gtccaggtcgagaaggaggagcgcggcaacaagggcgcggcgctcacgaccttcatctcg
ctcgccggccgctacctggtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgtcaggaactgcgcgaaaccatggcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcaa
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagcggcgtcgcaaagcggt
aactcgggtcagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgc
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcgcgcttccagatcgagcaccagatcgaaacggcctactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgccaccaagggcgccgacatcgaggaaacggcgacg
cgcacgaacctggaagccgccgacgaagtggcccgccagctgcgcctgcgcgacctcggt
ggcctgatcgtgatcgacttcatcgacatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggagctgtcgcgtcagcgcctgcgtccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgttgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaggtgctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccat
tgccaggtgccggtcgaagtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctaatcccgaacaagcacctcgatacg
ccgcactacaagctcgaacgcctgcgtcacgacgacgcgcgcctcgacgacccgcgtgcg
tcgtggaagatggccgaggaagcggcgcgcgagctggagtcggaaaccggctacagcaag
cgcacggccgacgtgaagccgaagcaggaagcggcggtcaagggcatcacgcccgaacgt
ccggcgccgagcccggcagcgccgcgcccggccgagccggtcgcggccgcaccggcgccc
gccccggctccggtcgcgccggcgagcggcggcttcatcggctggctgaagggcctgttc
ggcatggcgccggcggcggcaccggcgcccgcgccggtcgcaccggccccggtcagcgaa
ccggctgcccgtccggcccgcgagcgcaccgagaagtcggagcagcgcggcggcgatcgc
aaccgtaaccgtcgtggcggcccgcaggctcagggcggacgcgaccaggcagcggcaggc
cgcggcccgcgcctcgagcgcgaaggcaaggaagcgcgcgaaggtcgtgaaccgcgcgag
gctcgcgagccgcgtgaaggccgcgaaccgcgcgagaaccgcgaaggtcgtgagggccgc
gaaggtcgcgaaggccgaggcccgcgcgaaggtcgcgagccgcgtgaaaaccgcgaggca
cgcgaggcccgcgagccccgtgaaccgcgcgagcgcgccgagcagctggaagccggcgac
gcagccgggcgcggcgagcgccaggaacgcggcgaacgtcgcgagcgtggtgaacgcggc
gagcgcggtgagcgccgtaagccgacccaacacgcggcgacgctcgagacggtcaaccgt
ggcgagaaccatccggacgaggaagccgaccaggccgccgcagttgcgctgcccggcgca
gatgccgcagccgacgcggaagccagtggcgaggaacgtcgccgtcgccgccgcggccgc
cgtggcggtcgtcgcgagcgcgaggaagaaggcgcagtcgccgagcacggcgtcggcgat
gaagccgccgtgcaggaagtagcgaccgagtcgagcgcagcagcaccggctcatacggcc
gcagcgactgcaccggccgccgtggctgccgtcgcggcagcaggcgccgtcgtggccgaa
accgcggtcgagcagcacgccgaagccgccgcaccggccgcagtcgagccgcaaccggca
ccggtacgcgtcgaagcgacgccggtcgcgccgctggagccggccatcgccgctccggca
gccgcaacggcatcggtcgccccggccgccgctgtggaagcaggcccggcgccggtcgcg
gtttcgccgaccgacgcattcgaagtgccggccgagccggctgccgtcgaagcgccgcag
tccgcgcccgtcgagcacgccgcgccggcaccggtcgtcgcagtcgaagccgcaccggcc
ccggccgaaccggctcgcgtcgaagcggcaccggtcgaagctgctcgcgtcgaagctgcc
ccggtcgaaaccgttgcagcgccggcacccgcgacgccggctcctgcggctgctgcgccc
gtttcggccggcctcgaggtcgtactggaacaggccggtctggtgtgggtgaacaccgac
gccgacaagttccgcgccgcccaggaagccgcatcgcgcctgccgcgcgcggcccgcgtg
ccgcgcgaacgcaagccgctgccgccggccgattcgaccccgatgcagcaggtcgagacg
tcgcagcgttaa
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