Burkholderia sp. KJ006: MYA_1940
Help
Entry
MYA_1940 CDS
T02110
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
buk
Burkholderia sp. KJ006
Brite
KEGG Orthology (KO) [BR:
buk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buk03019
]
MYA_1940
Enzymes [BR:
buk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
MYA_1940
Messenger RNA biogenesis [BR:
buk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
MYA_1940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
nSTAND3
NACHT
T2SSE
AAA_19
nSTAND_NTPase5
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AFJ86301
LinkDB
All DBs
Position
1:complement(2092675..2096859)
Genome browser
AA seq
1394 aa
AA seq
DB search
MSNVPKSPAPTRANADPAQHPDGAADARQQPGRQQQTRQGGKPPRDDERRRDAGQPAAPA
TRAADGERTPRRERAPRAPIAPNPVPKISYPESLPVSGRRDEIARAIAAHQVVIVCGETG
SGKTTQLPKICLDLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVR
FTDNLAPGASVKLMTDGILLAETQNDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEILPR
RPDLKLIVTSATIDADRFARHFGSDARPAPVIEVSGRLYPVEVRYRPVAEDRPAVKNAEG
TGGRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIRDAAEALRKHHPPH
TEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYR
NKVEQLQVESISQAAANQRAGRCGRVADGICIRLYEESDFQARARFTDPEILRSSLAAVI
LRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRV
GRMILAARDQQALREVLIIASALSVQDPRDRPSDAQEQADQAHRRFADERSEFLQWLKIW
AWFEEAVAHKKSNRQLIDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLNEAEATYEQ
IHLALLTGLLGNLGLKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAELVETSRLYA
RCLAKIEPEWVEKVGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHRRRVAFGRQD
PARARELFIRGALVEGEFETRLPFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAYYDQ
AIPQGIHTGAAFERWYRDEVKKGGQPEDKQRLLYLSRDDLMRHEAAGVTTELFPKSMTMA
GVEMALTYHFEPGTPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKVQLLLKSLPQKLR
RHCVPLPEYAAGFVERMGRERFGAGGLVDALIADVRGETQVAMKTADFKLETLPAHLFMN
FKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASSIAASGDAAGDAPAGASAPGG
AGAPGALAKGGKPAKGAAPHTAAPAEAGATALYENLTTWNFGKLPELLEIRRRGQTLYGY
PALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLPGLREMAMQYMS
LGTQDELRDQLIDTALDRACLQEPLPDDDASFHARRDEGRSRLNLLAQEIARLVAQILAE
YAGLAKKLAQAKPFAQAHADLQQQLAALVGKRFVIDTPYVQLAHFPRYLKGIALRIDKLK
ADPARDAKQFAELHPLVQHYQRAVSQRGGVVDPRLAEFRWLLEELRISLFAQELRTPMPV
SVKRLHKVWESMQR
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgccgacgcgggccaacgcggacccggcgcagcac
ccggacggtgcagccgatgcgcgtcagcagccgggccggcagcagcaaacgcggcagggc
ggcaagccgccgcgcgacgacgaacggcgccgcgatgcgggccagccggccgcgccggct
acgcgcgcggccgacggcgagcgtacgccgcgtcgcgaacgtgcgccgcgcgcgccgatc
gcaccgaaccccgtcccgaagatcagctatccggaaagcctgcccgtgtcgggccggcgc
gacgagatcgcgcgcgcgatcgccgcgcatcaggtcgtcatcgtttgcggcgaaacaggt
tcgggcaagaccacccagctgccgaagatctgcctcgatctcggccgcggcctcggcgcc
ggcggcacgggcctgatcggccacacgcagccgcggcggctcgccgcgtcgtcgacgggc
cggcgcatcgccgaggagctcggcacgccgttcggcgaagtggtcggctacaaggtgcgc
ttcaccgacaacctcgcgccgggcgcgtcggtcaagctgatgaccgacggcatcctgctc
gccgagacgcagaacgatccgctgctgaaggcgtacgacacgctgatcatcgacgaggcg
cacgagcgcagcctgaacatcgacttcctgctcggctacctgaaggagatcctgccgcgc
cggccggacctgaagctgatcgtcacgtccgcgacgatcgacgccgaccgcttcgcgcgc
catttcggcagcgacgcgcgcccggcgcccgtgatcgaggtgagcgggcggctgtatccg
gtcgaggtccgctatcggccggtggccgaggaccgcccggccgtgaagaacgccgaaggc
accggcgggcgcgaccgcgtgaagaccgcgcgcgaggccgaacgcgacctgatggacgcg
atcgtcgacgcggtcgacgaactgtgccgcgaaggccccggcgacgtgctggtgttcctg
cccggcgagcgcgagatccgcgacgcggccgaggcgctgcgcaagcaccatccgccgcac
accgagatcctgccgctgttcgcgcggctgtcggcggccgaccaggacaaggtgttcaag
gcgtcgaacgcgcgccgcatcgtgctcgccaccaacgtggccgaaacgtcgctgaccgtg
ccgggcatccgctacgtcgtcgacaccggcctggcgcgcgtgaagcgctattcgtaccgc
aacaaggtcgagcagctgcaggtcgagtcgatctcgcaggccgccgcgaaccagcgcgcg
ggccgctgcggccgcgtggccgacggcatctgcatccgtctgtacgaagaaagcgacttc
caggcgcgcgcgcgcttcaccgatccggaaatcctgcgctcgtcgctcgcggcggtgatc
ctgcggatgaagtcgctgcacctcaccgcgatcgaatcgtttccgttcctcgagccgccg
cccggccgcgcgatcgccgacggctatcagctgctcaacgagctcggcgcggtcgacgac
gacaacgcgctgacgcctctcggccgcgagctcgcgcgcttgccgctcgacccgcgcgtc
ggccggatgatcctcgccgcgcgcgaccagcaggcgttgcgcgaagtgctgatcatcgcg
agtgcgctgtcggtgcaggatccgcgcgaccgtccgagcgacgcgcaggagcaggccgat
caggcgcaccgccggttcgccgacgagcgctccgaattcctgcaatggctgaagatctgg
gcgtggttcgaagaggccgtcgcgcacaagaaatcgaaccgccagctgatcgatgcgtgc
cgccagaacttcctgtcgcacctgcggctgcgcgaatggcgcgacgttcattcgcaactg
ctgacggtcgtgcgcgagcacggctggcgtctgaacgaagccgaggcaacctacgagcag
atccatctggccctgttgaccggcctgctcggcaacctcggcctgaaggccgacgacgat
ccgcattacctcggcgcgcgcgggatcaagttctatctgtggccgggctccgcgctcgcg
aagaaggccggccgctgggtgatggcggccgagctcgtcgagacgagccggctgtacgcg
cgctgcctcgcgaagatcgagccggagtgggtcgagaaggtcggcgcgcatctgttgaag
aagtcgctgtcggagccgcattgggagaagcgtcccgcgcaggtcagcgcgttcgagcgc
gcgacgctgtacgggctgccgatctaccatcggcggcgcgtcgcgttcggccggcaggac
ccggcgcgcgcccgcgagctgttcatccgcggcgcgctggtcgaaggcgaattcgagacg
cggctgccgttcttcgcgcacaaccgcaagttgctcgccgacatcgagcagctcgagcac
aagtcgcgccgccaggacgtgctggtcgacgacgagctgatctacgcgtactacgaccag
gcgattccgcaaggcatccatacgggtgcggcgttcgagcgctggtatcgcgacgaggtg
aagaagggcggtcagccggaggacaagcagcgcctgctgtatctgtcgcgcgacgacctg
atgcgtcacgaggcggccggcgtgacgaccgagctgttcccgaagagcatgacgatggcc
ggcgtcgagatggcgctcacctaccatttcgagcccggcacgccgcgcgacggcgtgacg
ctcgcggtgccgctgtacgcgctgaaccaggtcgacgcgcgccgttgcgaatggctggtg
ccggggatgctgaaggagaaggtgcagctgctgctgaagtcgctgccgcagaagctgcgc
cggcactgcgtgccgctgcccgagtacgcggccggcttcgtcgagcgcatgggtcgcgag
cgcttcggcgcgggcggcctcgtcgacgcgctgatcgccgacgtgcgcggcgaaacgcag
gtcgcgatgaagacggccgacttcaagctcgagacgttgcccgcgcacctgttcatgaac
ttcaaggtgatcgacgagcacgggcgccagctcgcgatgggccgcaatctcgcgcagctg
cgccaggagctcggcgcgcaggcgcagcagcagttccagaagatcgcggccgcgtcgtcg
atcgcggcgagcggcgatgcggccggcgacgccccggccggcgcatcggcgccgggcgga
gcgggtgcgccaggcgcgctggcgaagggcggcaagccggccaagggtgcggcgccgcac
acggcggcgcccgcggaagccggcgcgaccgcgctgtacgagaacctgacgacgtggaat
ttcggcaagcttcccgagctgctggagatccgccggcgcggccagacgctgtacggctat
ccggcgctcgtcgatcgcggcacgcattgcgacgtcgaggtgttcgactcgcccgaggaa
gccgcgcgcatccatcgtgcgggcttgcggcggctgttcgcgctgcagctgaaggagccg
atcaagttcctcgagaagaacctgccggggctgcgcgagatggcgatgcagtacatgtcg
ctcggtacgcaggacgaactgcgcgaccagctgatcgacacggcgctcgaccgcgcgtgc
ctgcaggagccgctgcccgacgacgacgcgagcttccacgcgcgccgcgacgagggccgc
agccgcctgaacctgctcgcgcaggagatcgcgcggctcgtcgcgcagatcctcgccgaa
tacgcggggctcgcgaagaagctcgcgcaggcgaagccgttcgcgcaagcgcacgccgat
ctgcagcagcaactcgcggcgctggtcggcaagcgcttcgtgatcgacacgccttacgtg
cagcttgcgcactttccgcgctatctgaagggcatcgcgctgcggatcgacaagctgaag
gcggacccggcgcgcgacgcgaagcagttcgccgagctgcacccgctcgtccagcattac
cagcgcgcggtgtcgcagcgcggcggcgtcgtcgatccgcggctcgcggaattccgctgg
ctgctcgaggaactgcgcatttcgctgttcgcgcaggaactgcgcacgccgatgcctgtc
tctgtcaagcgtctgcacaaggtgtgggagtcgatgcagcgctag
DBGET
integrated database retrieval system
