Burkholderia sp. KJ006: MYA_5961
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Entry
MYA_5961 CDS
T02110
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
buk
Burkholderia sp. KJ006
Pathway
buk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
buk00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
MYA_5961
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buk03021
]
MYA_5961
Transcription machinery [BR:
buk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
MYA_5961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r3
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Sigma70_ner
Sigma70_r4_2
HTH_25
Motif
Other DBs
NCBI-ProteinID:
AFJ90297
LinkDB
All DBs
Position
3:1025752..1027641
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AA seq
629 aa
AA seq
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MPARPAPRHAPVPVPVRAAGHDGDAPPHAAHLHALISTGLTRGFVTHGDIIDALPDDDAH
QGGVDATAAMLRELGIAVSDGAHAAGWTLDRYFQPTPSARAWAEGAGALAAAELSAPRTT
DPVRLYLREMGMTPLLTRDEEIMHAQRIERGRAASVAVLCGDPQALDALVAMRIEIAEGR
TAASAYVLSIPDISDMAPAGGAADSTHAGDTPVDAGASTRDDDAPADDGLCRHTVLARLA
PIDALAAAMRAALETDGAHGLAYRACVREAAALLGTLRMSMRALERMSEPLRTHARRQRT
LHGRLARTLADAGVPHGAAAACVQRDGDHARWLAACIAAHPECEPALTRRAAELVDARDA
IARAARTSPLPPDTIALLDARLDTIERAMQPARMGLFDANLRLVVSIAKRYPDRGLPFAD
LIQEGNIGLLKAIDRYDHRRGFRFSTYATWWIRQAITHALADLGRTIRVPTHTVDAINKL
TRIAREHRQRSGAAATPHELAVQMGEPLDKVRDLMSIVKEPMSADAPVSPEGEMTFVDVA
PDVSTPSPEDAAGAAQLRDTIAAMIGRLPAREATVLRLRYGLHADEGCSLRDIGRQLNLS
AERVRQIEASALARLRASDGLDVLRAFIA
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
ttgccggcgcgcccggcgccacggcacgcgccggtgccggtgccggtgcgcgccgccggc
cacgacggcgacgcgccgcctcacgcggcgcacctgcacgcactgatttcgacggggctc
acacgcggcttcgtcacgcacggcgacatcatcgacgccttgccggacgacgacgcccat
cagggcggcgtcgacgcgacggctgcgatgctgcgcgagctgggcatcgcggtgtcggac
ggcgcgcacgccgcgggctggacgctcgaccgttacttccagcccacgccgagcgcgcgt
gcgtgggccgaaggggccggcgcgctcgccgcggccgagctgagcgcaccgcgcacgacc
gaccccgtacgcctctacctgcgcgagatgggcatgacgccgctgctcacgcgcgacgag
gagatcatgcacgcgcaacggatcgagcgcggccgcgcggcgtcggtcgcggtgctgtgc
ggcgatccgcaggcactcgacgcactggtcgcgatgcgcatcgagatcgccgaaggccgg
acggccgcgtccgcttacgtgctgtccatcccggatatctcggacatggcgcccgccggc
ggcgccgccgacagcacgcatgccggcgatacgccggtcgacgcgggcgcgagcacgcgc
gacgacgacgctccggccgacgatgggctctgccgtcataccgtgctcgcgcgactggcg
ccgatcgacgcgctcgcggccgcgatgcgcgccgcactggaaaccgacggcgcgcacggt
ctcgcctaccgcgcctgcgtgcgcgaagcggccgccctgctcggcacgctgcgcatgtcg
atgcgcgcactcgagcgcatgagcgagccgctgcgcacgcacgcgcgccggcagcgcacg
ctgcacggccggctcgcacgcacgctcgccgacgcgggcgtgccgcacggcgcggcggct
gcgtgcgtgcagcgcgacggcgatcatgcccgctggctcgcggcgtgcatcgccgcgcat
cccgaatgcgagccggcgctgacgcgccgcgcggccgagctggtcgacgcgcgcgacgcg
atcgcgcgggccgcccgcacatcgccgctgccgcccgacacgatcgcgttgctcgatgcg
cggctcgacacgatcgagcgcgcgatgcagccggcgcggatgggcctcttcgacgcgaac
ctgcggctcgtcgtatcgatcgcgaagcgctacccggaccgcgggctgccgttcgcggac
ctgatccaggaaggcaacatcgggctgttgaaggcgatcgaccgctacgaccatcggcgc
ggcttccgcttctcgacctacgcgacctggtggatcaggcaggcgatcacgcacgcgctc
gccgatctcggccgcacgatccgcgtgccgacgcacaccgtcgacgcgatcaacaaactg
acacggatcgcgcgcgaacaccggcagcgttccggcgctgccgcgacgccgcacgaactg
gccgtgcaaatgggcgagccgctcgacaaggtgcgcgacctgatgtcgatcgtgaaggag
ccgatgtcggccgacgcgcccgtctcgccggaaggcgagatgaccttcgtcgacgtcgcg
cccgacgtatcgacgccgtcgcccgaagacgccgccggcgccgcgcagttgcgcgacacg
atcgcggcgatgatcggccgcctgcccgcgcgcgaggcgacggtcctgcggctgcgctac
gggctgcacgcggacgaaggctgctcgctgcgcgacatcggccgacagctgaacctgtcc
gccgaacgcgtgcggcagatcgaggcgtcggcgctcgcgcggctgcgcgcgtccgacggg
ctcgacgtgctgcgcgcgttcatcgcatag
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