Burkholderia humptydooensis 2002721687: BW21_1325
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Entry
BW21_1325 CDS
T03759
Name
(GenBank) ribonuclease, Rne/Rng family domain protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bul
Burkholderia humptydooensis 2002721687
Pathway
bul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BW21_1325
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bul03019
]
BW21_1325
03009 Ribosome biogenesis [BR:
bul03009
]
BW21_1325
Enzymes [BR:
bul01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
BW21_1325
Messenger RNA biogenesis [BR:
bul03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BW21_1325
Ribosome biogenesis [BR:
bul03009
]
Prokaryotic type
rRNA processing factors
BW21_1325
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AJY42456
LinkDB
All DBs
Position
I:complement(1425869..1429015)
Genome browser
AA seq
1048 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQSAQEAAAPVAAAPASGGGFMKWLKGLFGVQPAAAPAPAPAAQETAARPAR
ERAERGERGEKAERGCDRNRNRRGAAQQAGGRDQVAAGGGRAQAPRAEREGKETREPREG
REARGGRDNREGREARESREPREPREQREQREPREPRERAETPEAAEAPRGERRERGERR
KPAPHAATLETVNRGESAHAEAAEKPMHAPGAEAGVDADSNARDGEERRRRRRGRRGGRR
EREDEGAVQAAEGGEGVTAETVEHAEPAQRGVAPVAGHEPQHAAQAGAGAAAIAAAAVAA
ETVTHVESGAKAEPQPAAEAPVADTARAGAEAEAAPARPVEAPAQAEVEQAAPATTAHAQ
PAAADIAHEQAAPVATAPAEAAAAEAPAAEASEVAAPAAEPQQPAPVAAAPAEADVAHEP
APVAETHVPAAAQAEAPALAPVAAAPGASLETVLESAGLVWVNTDTDKLRAAQAAAAQIV
PPARAPRERKPLPPVDATPMQQVETTHR
NT seq
3147 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccggacgcgaacagcgcaaaggcaat
atctacaagggcgtcgtcacccgcatcgagccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagttgcccgccagtatttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcgctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggcgctgaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcattgagggcgacgagcgccaggagttgcgcgagacgatggcgcagttgcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaactgcaa
tgggacctgaactacctgctgcagctctggcgcgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggatatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgcgcgttcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcgcgcttccagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgaccacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgacgaagggcgcagacatcgaggaaacggccacc
cgcacgaacctcgaggcggccgacgaagtcgcccggcagttgcgcctgcgcgacctgggc
ggcctgatcgtgatcgacttcatcgacatggaatcggcgaagagccagcgcgaggtcgag
cagcgcctgaaggacgcgctcaagcacgaccgcgcacgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtccgaaggcagc
cacgtgacctgcccgcgctgcaacggcacgggccatatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaggcgatgaaggagaacaccgcggcgatccac
tgccaggtgcccgtcgaggtcacggccttcctgctcaacgaaaagcgtcaagaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgcc
tcgtggaagatggccgaggaggccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgagcgt
ccggcgccgagccccgcgccgcagcgccagagcgcgcaggaagcggcggcgcccgtggcc
gccgcgcccgcgagcggcggcggcttcatgaagtggctgaagggcctgttcggcgtgcag
ccggccgcggcgcccgcaccggcgcccgccgcgcaggaaacggccgcgcgtccggcgcgc
gagcgcgcggagcgcggtgaacgcggcgagaaggccgagcgcggctgcgatcgcaatcgc
aaccgtcgcggcgccgcgcagcaggcgggcgggcgcgaccaggtcgcggccggcggcggc
cgcgctcaggcgccgcgcgccgagcgcgaaggcaaggaaacccgcgagccgcgcgaaggc
cgcgaagcacgcggcggccgggacaaccgggaaggccgcgaagcgcgcgaaagccgcgaa
ccccgtgagccgcgcgagcaacgtgaacaacgcgaaccgcgtgaaccgcgcgagcgcgcc
gaaacgcccgaggccgcggaagcgccgcgcggcgagcgccgtgaacgcggcgagcgccgc
aagccggccccgcacgccgcgacgctcgaaaccgtgaaccgcggcgaaagtgcgcacgcg
gaagccgccgagaagccaatgcacgcgcctggcgcggaagccggcgtcgacgcggattcg
aacgcacgcgacggcgaagagcgccgccgccgccgccgcggtcgccgtggcggccgccgc
gagcgtgaagacgaaggcgcagtgcaggcggcggaaggcggcgaaggcgtgacggctgaa
acggtcgagcatgccgagccggcgcagcggggcgtcgcgcccgtcgccggtcacgagccg
cagcatgccgcgcaagcgggtgcgggcgcggcggcgatcgcggcggcagccgtcgcggcg
gaaacggtcacgcatgtcgagagcggcgcgaaggccgagccgcaaccggcggccgaagcg
ccagtcgccgacaccgcacgggccggggcagaggccgaagcagcgcctgctcgccccgtc
gaagcaccggcgcaagccgaagtcgagcaagccgcgccggcaaccacggcgcacgcgcag
ccggctgcggccgacatcgcgcacgagcaagccgctccggttgcaacggcccccgccgaa
gccgctgcggccgaggcgccggccgcggaagcgtccgaagtcgccgcgccggccgccgag
ccgcagcagcccgcgcctgtcgcggccgcgccggccgaagcggatgtcgcgcacgaaccg
gctcccgtcgccgagacgcacgtcccggcagccgctcaagccgaggcgcccgccctggcc
cccgtcgcggccgcgccgggcgcgagcctcgaaacagtgctcgaatccgccggccttgtc
tgggtcaacacggacacggacaagctgcgcgccgcgcaagccgccgccgcgcaaatcgtg
ccgcccgcgcgcgcgccgcgcgaacgcaagccgctgccgcccgtcgacgcaacgccgatg
cagcaagtcgagacgacgcaccgctga
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