Burkholderia sp. PAMC 26561: AXG89_01120
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Entry
AXG89_01120 CDS
T05481
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG89_01120
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bum03019
]
AXG89_01120
03009 Ribosome biogenesis [BR:
bum03009
]
AXG89_01120
Enzymes [BR:
bum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
AXG89_01120
Messenger RNA biogenesis [BR:
bum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AXG89_01120
Ribosome biogenesis [BR:
bum03009
]
Prokaryotic type
rRNA processing factors
AXG89_01120
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AME22638
UniProt:
A0A125SEY2
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All DBs
Position
1:224934..228296
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AA seq
1120 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLDLPEGMSIIARTAGIGRSAEELQ
WDLNYLMQLWRAVEAASQSGVAGKPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHDQ
ASAFMDIVMPDNLSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARSTKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRSEINKIESRFKVNVVLIPNKHLET
PHYKLERLRHDDTRLDEPRASWKMAEEAAHELESETGYSKRTEEVKPKQEAMVKGITPAS
PAPSAPVKVAAAPVAAPAPVAASTGGFIGWLKNLFGVQPEVKPAPAPVVTPAPVRPARGD
RPERSGQGGDRNRNRRGGTGSRDSAAAVAGTAAATPGTAGGRQNPRREEREPKEAREPRE
PREGREGREPREPREPRGGREGREPREAREGREPREQREPREPRESRDNRERTEAADRGE
RRDRGDRPERGERKKPQPEAAVEALTQGETVVSELTENTQAGQESQQNGNADALQADQAS
AAREGEERRRRRRGRRGGRRDREEEGVTVNQAADIAEGEGTAESTDPERAQAGVFDTDGD
DTREFAPAAATPVQATPAAVTVEPVAAAAVAVTELPEPVRAVPVETVAPVSIPAAQPVAE
SIEAKHAEAEGFVVQHEAHEVHTPHAETPAITVFEKPAAPRPVENPFGPTPKVAEEKPAS
PFIDTPKAEEPVVAQAAPEAAPQAAETLAQPAEPLKTAAVAAAPESEMVSAIAPPVPVVA
EASAPVVSEPVKAFEAVETAAPAPVAPAPAVAPVALKEEALKPMLDTAGLVWVNTDADKL
RAAREAADQVEAPTRVVRERKRLPPLDAAPMQQVETGKDA
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgtttaacgcgacgcagcaagaagaattgcgcgtcgctatcgtcgat
gggcaaaaactcatcgacatcgacattgaaaccgccgggcgcgaacagcgcaaaggcaac
atctacaagggagtcgtcacccgcatcgagccgtcgctcgaagcctgttttgtgaactac
ggcgaagaccgccatggtttcctgccgttcaaggaagttgcccgccagtacttcaaggac
ggcgtggacatgcgctccgcgcgcatccaggacgcgctgcgcgaaggccaggaactgatc
gtccaggtcgagaaggaagagcgcggcaacaagggcgcggccctgaccacgttcatttcg
ctcgccggacgttaccttgtcctgatgccgaacaacccgcgtggcggtggtgtatcgcgc
cggatcgagggcgacgaacgccaggaattgcgcgaaacgatggcccagctcgacttgccg
gaaggcatgagcatcatcgcgcgtacggcagggatcggccgctcggctgaagaactgcag
tgggacctgaactacctgatgcaattgtggcgcgcggtggaagcggcgtcgcaaagcggc
gtagccggcaaaccgatgctgatttatctcgaatccagcctcgtgatccgcgcgatccgc
gattacttccagccggatatcggcgaaatcctgatcgataccaccgagatccatgaccag
gccagcgccttcatggacatcgtgatgccggataacttgagcaaagttaaacgctatcac
gacgacgtacccctcttctcccgtttccagatcgaacaccagatcgagaccgcgtattcg
cgcacggtgccgttgccttcgggcggcgcgatcgtgatcgaccacacggaagcgctggtt
gccatcgacgtgaactcggctcgctcgaccaagggcgcggacatcgaggaaacggcgaca
cgcacgaacctcgaagctgccgacgaagtcgcgcgccagttgcgcctgcgcgatctgggc
ggcttgatcgtgatcgactttatcgatatggagtcggccaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgttgaagcacgatcgtgcgcgcgtacaaatgggcaagatttcc
cgcttcggtttgatggaactgtcgcgtcagcgcctgcgtccggcgttgtccgaaggcagc
cacgtgacctgcccgcgttgtaacggcacgggccatatccgtgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaagcaatgaaggaaaacaccgcggcaattcat
tgccaggtgccggtggaagtcaccgctttcctgctgaacgaaaagcgttcggaaatcaac
aagatcgagtcgcgtttcaaggtcaacgtcgtgttgatcccgaacaagcatctcgaaacg
ccgcactacaagctggaacgcctgcgtcacgacgatacacgtctggacgagccgcgtgca
tcgtggaagatggccgaggaagccgcgcacgaactggaatccgaaacgggttacagcaag
cgcaccgaggaagtgaagcccaagcaggaagcgatggtcaagggcatcacgccagcttct
cccgcgcctagcgcgccggtgaaggtcgcggcggctccggtcgcggcacccgcgccggtg
gcggcatcgactggcgggttcatcggctggttgaagaacctgtttggcgtgcagccggaa
gtgaagccggcgccggcgccagtcgtcacgcccgcgccggtacgtccggcccgcggcgat
cggccggaacggtcgggacaagggggtgaccggaaccgcaatcgccggggtggcaccgga
tcgcgtgacagcgcagcggctgttgcaggtacggcagcagccacgccaggtacggcgggc
ggccgtcaaaacccgcgccgcgaggaacgggaaccgaaggaagcacgcgaaccgcgtgaa
ccacgtgaaggccgtgagggtcgcgaaccgcgcgagccaagggaaccgcgtggtggccgt
gaaggccgcgagccgcgtgaggcacgcgaaggccgcgagccgcgcgaacagcgtgagcca
cgcgagccgcgcgaatcgcgcgacaaccgcgaacgtacggaagccgccgatcgaggtgag
cgtcgtgaccgtggcgatcgtccggagcgcggtgaacgcaagaagcctcagccggaagct
gctgtcgaagcattgacgcaaggcgaaacggtcgtgtcggagttgacggaaaacacgcaa
gcaggccaggaatcccagcaaaacggcaacgccgacgcattgcaggccgatcaggcgagc
gcagcgcgtgaaggtgaagagcgccgccgtcgccgtcgtggccgtcgtggtggacgccgc
gatcgtgaagaagaaggcgtgacggtgaatcaggctgcggatatcgcggaaggcgaaggc
acggctgaaagcaccgatccggaacgcgctcaagccggcgtattcgataccgatggcgac
gacacgcgcgagttcgcgcctgccgcagccacaccggttcaagcaaccccggcggctgtc
acggtcgagccggttgccgctgccgcggtcgccgtgacggaattgccggagccggttcgc
gccgtgccggtcgaaacggtcgcgccggtttccatccctgccgcgcagccagttgcagaa
tcgatcgaagcgaagcacgccgaagccgaagggttcgtggtgcagcacgaggcgcatgaa
gttcacacgccgcatgctgaaacgccggcgatcaccgtgttcgagaagccggcagcaccg
cggcccgtcgaaaacccgtttggcccgacgccgaaggtagcggaagaaaagccggcgagt
cctttcatcgataccccgaaggcagaggaaccggtcgtagctcaggccgcgcctgaagcc
gcaccgcaagccgctgaaacgcttgcccagcctgccgagccgctgaaaacggcggctgtt
gcggctgcgccggaatcggaaatggtatctgcgattgcgccgcccgtgcccgtggtggcg
gaagcgtctgcaccggtcgtatccgagccggtgaaggcctttgaagcggtggaaaccgct
gcgcccgccccggttgctccggcgcccgcggttgccccggtcgcgctgaaggaagaagcc
ctcaagccgatgctggatacggcgggtctcgtctgggtgaacaccgacgccgacaagctc
cgcgctgcgcgcgaagccgcggatcaggtcgaagcgccgacacgcgtcgtgcgggagcgc
aagcgcctgccgccgctcgacgccgcgccgatgcagcaagtggaaacgggtaaggacgca
taa
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