Burkholderia sp. PAMC 26561: AXG89_03180
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Entry
AXG89_03180 CDS
T05481
Name
(GenBank) ribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
bum
Burkholderia sp. PAMC 26561
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bum03016
]
AXG89_03180
Enzymes [BR:
bum01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
AXG89_03180
Transfer RNA biogenesis [BR:
bum03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
AXG89_03180
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
Motif
Other DBs
NCBI-ProteinID:
AME22979
UniProt:
A0A0X8L336
LinkDB
All DBs
Position
1:complement(692432..694492)
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AA seq
686 aa
AA seq
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MNVFFEESGSFKAGAVLSKANDAFQVELPGGRRAKVRAKDVLIEFEKPNAADLMQQADAI
AKDIDLDFLWECAPEEEFPFAELGADYFGDKFGATERAALVLRMHGSPVYFRRKGRGQYQ
RAPQEQLQMALAGLEKKRQLALVQAGYEEELVAGKLPEALAGKAIGLLTKPDKNSIEYKA
LEGAAATRGISQARLMLEVGGIPSARALHEARFLSEFFPHGTGFAPVTVPPLPDDLPEAH
VQAFSIDDVTTTEIDDAFSVEHLADGRVRIGVHIAAPALGITRGDMIDAIARTRLSTVYM
PGDKITMLPDSVVEAFTLAEGGLRPALSLYIIVNRETQEIVASETRAERVFVKSNLRHNY
LDEHVTEESLAAGTGEYPHKDDIAVLWPLAQALFEKRQEARAGYGLRREVQRNNDFNFYV
EGEHIEITPRRRGSPLDLIVAELAILANSSWGAFLNDHSVPGIYRSQRGFGAPGPKRTRM
QTTPAPHEGLGVAQYAWSTSPLRRYVDLVNQWQLLACVRHGVTAALVAPFKPKDADLFAV
VQGFDDQYSAYADHQRRMEFFWCLRWLKQENKKQVVAAVVKDDLVRLDEIPLMLHVPGLG
VHARGTKVMLEVMNLDELTVEASCRLLHVIDAPSGAATQPEEPEEELVEAEDLSAESEAE
AQAEATPAEEPQPAGENTPDATEPAQ
NT seq
2061 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgtttttttcgaggaatcgggtagtttcaaggccggcgctgttttgtcgaaggca
aacgatgcattccaggtcgaattgccgggcggacggcgcgcgaaggtgcgcgcaaaagac
gtgttgatcgagttcgagaaaccgaatgccgccgatttgatgcaacaggccgacgccatc
gcgaaggacatcgatctggatttcctgtgggaatgcgcgccggaggaagagtttccgttc
gcggagctcggcgcggattatttcggcgataaattcggcgcgaccgaacgcgccgcgctc
gtcttgcgcatgcacggatcgccggtgtatttccgccggaaaggccgtggccaatatcag
cgcgcgccgcaggaacagttgcagatggcgctcgccgggctggagaagaaacggcaactc
gcgctcgtgcaggccggctacgaagaggaactagtcgccggcaaattgcccgaagcgctc
gccggcaaggcaattggcttgctgacgaagccggacaagaactccatcgaatataaggcg
ctcgagggcgccgcagcgacgcgcggcatctcgcaagcgcggctgatgctggaagtcggc
ggcattccgtcggcgcgtgcactgcacgaagcgcgttttctctccgaatttttcccgcac
gggacgggctttgcgccggtcaccgtgccgccgttgccggacgatctgccggaagcgcac
gtccaggcgttttctatcgatgacgtcacgaccaccgaaatcgatgacgcgttttccgtc
gaacatctcgccgatggccgcgttcgtatcggcgtgcatattgccgcgccggcgttgggc
attacgcgcggcgacatgatcgatgcgatcgcgcgcacgcgtctttcaacggtctacatg
cccggcgacaagattacgatgctgccggacagcgtcgtggaagcgttcacgcttgccgaa
ggcgggttgcggccggcgttgtcgctttacatcatcgtgaaccgggaaacacaggagatc
gtcgccagcgaaacgcgtgcagaacgcgtgttcgtgaagagcaatcttcggcacaactat
ctcgatgaacacgtcaccgaggaatcgctcgcggcgggaacgggcgaatatccgcacaag
gatgacatcgcggtgctgtggccgctcgcgcaggcgctgttcgaaaagcgtcaggaagcg
cgtgccggttacggtttgcggcgcgaggtgcagcgcaataacgacttcaatttttatgtg
gaaggcgaacacatcgagatcacgccgcgccgccgcgggtcgccgctcgatctgatcgtg
gccgaactggcgattctcgcgaattcatcgtggggcgcattcctcaatgatcacagcgtg
ccgggcatttaccgctcgcagcgcgggtttggcgcgccgggtccgaagcgcacgcgcatg
cagaccacgcccgcgccgcacgaagggctgggcgttgcgcaatacgcgtggagcacgtcg
ccgttgcgccggtatgtcgacctggtcaatcaatggcagttgctcgcgtgcgtgcggcat
ggcgtgacggcggcgctcgtcgcgccgttcaagccgaaagatgccgatctgttcgcggtc
gtccagggattcgatgaccagtattccgcctacgccgatcatcaacggcgcatggaattc
ttctggtgtctgcgctggctgaagcaggagaacaagaagcaggtcgtggcggcggtggtg
aaggacgatctcgtgcgcctcgatgaaatcccgctgatgctccacgtccccgggctcggc
gtgcatgcgcgcggaacgaaggtgatgctggaagtgatgaatctcgatgaactcaccgtc
gaggcatcgtgccgcttgttgcacgtgatcgatgcaccttcgggcgcggcaacgcagccg
gaagagccggaagaagagctggtcgaagcggaagacctgagcgccgaaagcgaggccgag
gcgcaggcggaagccacgcctgcggaagagccgcaaccggctggcgaaaacacgccggac
gcgacggagcccgcgcaatga
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