Burkholderia sp. PAMC 26561: AXG89_10865
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Entry
AXG89_10865 CDS
T05481
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bum
Burkholderia sp. PAMC 26561
Pathway
bum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AXG89_10865
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bum03019
]
AXG89_10865
Enzymes [BR:
bum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AXG89_10865
Messenger RNA biogenesis [BR:
bum03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AXG89_10865
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
AME25295
LinkDB
All DBs
Position
1:2366540..2368030
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AA seq
496 aa
AA seq
DB search
MSATPHVPEAAAPAPVPTFDQFGLSADILRAVVESGYTIPTPIQAQAIPVVLAGRDVMGA
AQTGTGKTASFSLPIIQRLLPMASTSASPARHPVRALILTPTRELADQVAANVQAYSKHT
PLRSTVVFGGVDMNPQSEALRRGVEILIATPGRLLDHVQQKTLNLGQVQMLVLDEADRML
DMGFLPDLQRILNLLPKERQTLLFSATFSGEIKKLAATYLRNPQTIEVARSNSTNANVRQ
IVFEVAESDKSGAVTQLIRERGLKQVLVFCNSKIGASRLARVLEKDGIIATAIHGDRTQG
ERMQALDAFKKGEIEALVATDVAARGLDITDLPAVINFDLPFSAEDYVHRIGRTGRAGAT
GDALSLCSPNERKQLADIEKLIKRPLEVMTLKVDVPVRRESSPGRRDERPARAERGESRH
ARSEEPRRRSTSFERSHSRQQPVDDFFLKPYVASPASARKAQDEAAAEAERKNTPRQPLA
ALLGGLGMPRRTPSES
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atcagcgctacgcctcacgtacccgaggctgcagcgcctgctcccgtgcctacattcgac
cagttcggcctgtccgccgacatcctgcgcgcagtcgtcgaatccggctacacgatccct
acgcccatccaggcgcaggccattccggtggtccttgcaggccgcgacgtcatgggcgcc
gcgcaaaccggtacgggcaagactgcaagtttctcgctgccgatcatccagcgcctgctg
ccaatggccagcacgagcgcatcgcctgcccggcaccccgtgcgcgcgctgatcctcacg
cccacacgtgagctcgccgatcaggtcgccgccaacgtgcaggcttattccaagcacacg
ccgctgcgcagtacggtggtgttcggcggtgtcgacatgaatccgcagtcggaagccttg
cggcgcggcgtggaaatcctgatcgcaacgcccgggcgcttgctcgaccacgttcagcaa
aagacgctgaatctcggtcaggtacagatgctcgtgctggacgaagccgaccgcatgctc
gacatgggtttcctgccggatttgcagcgcatcctgaacctgctgccgaaggagcgccag
acgctgctgttttcggccacgttctcgggcgaaatcaagaaactggcagcgacttatttg
cgcaatccgcaaaccatcgaagtcgcacgcagcaattccacgaacgcgaacgtgcggcaa
atcgtgttcgaagtcgctgaaagcgacaagtcgggcgcggtaacgcagttgattcgcgag
cgcgggctgaagcaggtgctggtgttctgtaacagcaagatcggcgcaagccgtctcgca
cgcgtgctcgaaaaagacggaatcatcgcgacggccatccacggcgatcgcacgcagggc
gagcgcatgcaggcactcgatgcgttcaagaaaggcgagatcgaagcgctggtcgcgacc
gacgttgccgcgcgtggcctcgacatcaccgatttgccggcagtgatcaatttcgacctg
ccgttcagcgcggaagactacgttcaccgtattggccgaaccggacgggcgggtgcgacg
ggcgacgcgttgtcgctgtgcagcccgaacgagcgcaagcaactcgccgatatcgaaaag
ctgatcaagcggccgctcgaagtcatgacgctgaaggtcgatgtcccggtgcggcgcgaa
tcgtctccgggtcgccgcgacgaacggccggcccgcgccgaacgcggtgaatcccggcat
gcacgcagcgaggagccgcgccgccgttctacatcgttcgaacgttcgcattcgcgccag
caaccggtcgatgactttttcctgaagccgtatgtggcgtcgccggcatcggcgaggaaa
gcacaggacgaggcagcggcggaagccgagcgcaagaatacgccgcgtcagccgttggct
gcgttgctgggcggattgggcatgccgcgcaggacgccgtcggagtcttga
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