Burkholderia sp. HB1: AC233_04665
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Entry
AC233_04665 CDS
T04094
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03030
DNA replication
buq03430
Mismatch repair
buq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AC233_04665 (dnaE)
03430 Mismatch repair
AC233_04665 (dnaE)
03440 Homologous recombination
AC233_04665 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
buq03032
]
AC233_04665 (dnaE)
03400 DNA repair and recombination proteins [BR:
buq03400
]
AC233_04665 (dnaE)
Enzymes [BR:
buq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
AC233_04665 (dnaE)
DNA replication proteins [BR:
buq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
AC233_04665 (dnaE)
DNA repair and recombination proteins [BR:
buq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
AC233_04665 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
ALE54099
LinkDB
All DBs
Position
1:1078247..1081837
Genome browser
AA seq
1196 aa
AA seq
DB search
MSPMSDPRFVHLRVHSEFSIADGIVRLDDVVKAAAKDGQGALALTDLGNAFGLVRFYKEA
RGKGVKPIAGCDVWITNPDDRDKPSRLLLLVKDRRGYLNLCELLSKASLTNQYRGRAEIE
AGWLESGLGEGLLALSGAQQGDVGLALAAGNQEAAKRNALHWAKVFPGGFYIELQRCGQP
GGEQYVQQAVALAASLKLPVVATHPMQFMTPDDFTAHEARVCISEGDILANPRRQKRFTP
EQYFRTQDEMTALFADIPSALANTVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVHL
SKEGLEKRLEQLYPDEAERAAQRDTYYQRLEFECGTIIKMGFPGYFLIVADFINWAKNNG
VPVGPGRGSGAGSLVAYALGVTDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVI
QYVKEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGIAKLIPFKPGKHVTIAD
AMKEEPLLQERFDNEDEVHQLLELAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGD
ESGVVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKKDWSLAQVPLDDPA
SFSILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVALYRPGPMDLIPSFCARKHG
REVVEYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKAEEMAQ
HRELFRQGAAKNGLTGEKADEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEF
MAANMSLAMDDTDKVKILFEDCITNKMTVLPPDINLSAYRFEPVAEPDGKRSKTIRYGLG
AIKGSGQNAIEEILRAREDGPFIDIFDFCNRIDRRVVNRRTVEALIRAGAFDTLHQNRAQ
LIASVSLAMEAAEQASANALQAGLFDMGDAPSQGHELVDEPEWPEKKKLQEEKAALGFYL
SGHLFDAYKDEVRRFVRQKIGELKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGTGQC
EVTVFNETFEANKQLFKEDELLVVQGQARNDAFTGGIRFTVDTVMDLGRARCRYAEAVKV
KMNGNADALALRRVLEAHSAGKDEPQAAPAPAASARGNGGGRNGGSGGFGGGYGGDNGRQ
RQPVQIPNGLAVQIVYRSENAEGEMRLGDAWRVKPTDELLADLRGQFAGSAIEIVY
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcccatgtcagatccccgcttcgtccatctccgcgtccactccgaattctcgatc
gccgacggcatcgtgcgtcttgacgacgtcgtcaaggcggccgccaaagacggtcagggc
gcgctcgctctcaccgacctcggcaacgcgttcggtctcgttcgtttctacaaggaagcg
cgcggcaaaggggtcaaacccattgccggctgcgacgtctggatcacgaatcccgacgac
cgcgacaagccttcgcgcctgttgctactggtgaaagaccggcgcggctatctgaatctg
tgcgagttgctaagcaaggcttcgctcacgaaccagtatcgcggacgcgcggaaatcgag
gccggctggttggaatccggcctcggcgaaggcttgcttgcgttgtcgggcgcgcagcag
ggcgacgtcggcttggcgcttgccgccggcaatcaggaggcggccaagcgcaacgcgctg
cactgggcgaaggtgtttccgggcggcttctacatcgagttgcagcgctgcggtcagccg
ggcggcgagcagtacgtgcagcaggcggtcgcgctcgcggcgtcgctgaaactgccggtg
gtcgccacgcacccgatgcagttcatgacgcccgacgacttcaccgcgcacgaagcgcgc
gtgtgtatttccgaaggcgacatcctcgcgaatccgcggcgtcagaagcgctttacgccc
gagcagtatttccgcacgcaagacgaaatgaccgcgctgttcgcggacattccgtcggcg
cttgccaatacggtggagatcgccaagcgctgcaatctcacactcgaactcggcaagccg
aaactgccgctctttccgacgcccgacggcatgtcgctcgacgactacctcgtgcatctg
tcgaaagagggcctggaaaagcgtctcgagcagttgtaccccgatgaagccgagcgcgcc
gcgcagcgcgacacgtattaccagcggctcgaattcgagtgcggcacgatcatcaagatg
ggctttccgggctacttcctgatcgtcgcggacttcatcaactgggcaaagaacaacggc
gtaccggtggggccgggccggggttcgggcgcgggctcgctcgtcgcgtacgcgctcggc
gtgaccgacctcgatccgctgcgctacaacctgctgttcgaacgtttcctgaacccggaa
cgtgtgtcgatgcccgacttcgacatcgacttctgccagcacggccgcgaccgcgtgatc
cagtacgtgaaggaaaagtacggcgcggacgccgtctcgcagatcgcgaccttcggcacg
atggcggcgaaggcggcggtgcgcgacatcggccgcgtgctcgatctcggctatatgttc
acggacggcatcgccaagctgatcccgttcaagccgggcaagcacgtcacgattgccgac
gcgatgaaggaagagccgctcttgcaggagcgcttcgacaacgaagacgaagtgcatcag
ttgctcgagctcgcacaacgcgtcgaaggtctcacccgtaacgtcggcatgcatgcgggc
ggcgtgctgatcgcgcccggcaagctgaccgacttttgcccgctgtacacacagggcgac
gaaagcggcgtcgtgagccagtacgacaaggacgacgtcgaagccgtcggcctcgtcaag
ttcgactttttgggcctgaccacgctcacgattctcgactgggccgagcgctatatccgc
cgtctcgatccgtcgaagaaagactggtcgctcgcgcaagtgccgctcgacgatcccgcc
tcgttttcgattctcaagaaagcgaatacggtcgccgtgttccagctggaaagccgcggc
atgcagggcatgctgaaggacgcgcagcccgaccgtttcgaagacatcatcgcgctcgtc
gcgttgtatcgtccgggcccgatggacctgatcccgagcttctgcgcgcgtaagcacggg
cgcgaagtggtcgagtatccggacccgcgtgtcgaacctgttctgaaagagacctacggc
atcatggtctaccaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctc
ggcggcgcggacttgctgcgtcgcgcgatgggcaagaagaaggccgaggaaatggcccag
catcgcgagctgttccgccagggcgccgcgaagaatggcctgaccggcgagaaggccgac
gaaattttcgacttgatggagaagttcgccggctacggcttcaacaagtcgcacgcggcc
gcgtatgcgttgctcgcgtattacaccgcgtggctgaaggcgcaccatccggcggaattc
atggcggcgaatatgtcgctcgcgatggacgacacggacaaggtcaagatcctgttcgaa
gactgcatcacgaacaagatgacggtgctgccgccggacatcaacctgtcggcgtatcgt
ttcgaaccggttgcggagcctgacggcaagcgctcgaaaaccatccgctacggcctgggc
gcaatcaagggcagcgggcagaatgcgatcgaagaaattttgcgcgcgcgcgaagacggt
ccgtttatcgacatcttcgatttctgcaaccggatcgaccgtcgcgtggttaatcgccgc
acggtcgaagcactgattcgcgccggcgcgttcgatactttgcatcagaatcgcgcgcaa
ctcatcgcgtccgtttcgctcgcgatggaagccgccgaacaggcgagcgcgaatgcgttg
caggccggtttgttcgatatgggcgacgcgccgtcgcaaggccacgaactcgtcgacgaa
cccgagtggccggaaaagaagaagctccaggaagagaaggccgcactcggcttttatctg
tcgggccatctgttcgacgcctacaaggacgaagtgcggcgcttcgtgcggcagaagatc
ggcgaattgaaagaagggcgcgacaagctggtcgcgggcatcatcgcgtcgctgcgcacg
cagatgacccagcgcggcaagatgctgatcgcgctgctcgacgacggcaccggtcaatgc
gaagtgacggtgttcaacgagactttcgaggcgaacaagcaactcttcaaggaagacgag
ttgctggtcgtgcagggccaggcgcgcaacgacgcgttcacgggcggcatccgcttcacg
gtggatacggtcatggacctcggccgcgcacgctgccgttacgcagaggccgtgaaagtg
aagatgaacggcaacgccgacgcgctggcgctgcggcgcgtgctcgaagcgcatagcgcg
ggcaaggatgagccgcaggcggcgccggcacccgcggcttcggcgcgcggcaacggcggc
gggcgcaatggcggtagcggcggcttcggtggcggctacggcggcgacaacggacgccag
cgtcagccggtgcaaatcccgaacgggctcgcggttcagatcgtgtatcgaagcgagaat
gccgagggcgaaatgcgtcttggcgacgcctggcgcgtgaagccgaccgacgaattgctg
gccgatctgcgcggccagttcgccggcagcgcgattgagatcgtgtattaa
DBGET
integrated database retrieval system
