Burkholderia sp. HB1: AC233_05355
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Entry
AC233_05355 CDS
T04094
Name
(GenBank) polynucleotide phosphorylase/polyadenylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC233_05355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buq03019
]
AC233_05355
03016 Transfer RNA biogenesis [BR:
buq03016
]
AC233_05355
Enzymes [BR:
buq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
AC233_05355
Messenger RNA biogenesis [BR:
buq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AC233_05355
Transfer RNA biogenesis [BR:
buq03016
]
Prokaryotic type
tRNA degradation factors
AC233_05355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
RNase_PH_C
S1
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
KH_PNO1_2nd
Motif
Other DBs
NCBI-ProteinID:
ALE54211
LinkDB
All DBs
Position
1:1228594..1230735
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AA seq
713 aa
AA seq
DB search
MFSKIVKEFKWGQHNVRLETGEIARQASGAVIVDVEDTVILATVVGAKTAKPGQDFFPLT
VDYLEKTYAAGKIPGGFFRREGRPSEGETLISRLIDRPLRPLFPEGFYNEVQVVIHVLSL
NPDVPADIPALIGASAALAVSGLPFNGPVGAARVAYINNEYVLNPTRPQMKESALDLIVA
GTERAVLMVESEAQQLSEEVMLGGVVFGHEQMQIAIDAIHDLVREGGKPEWDWQPAAKNE
PLIARVTELAQAELLAAYQIRDKQARSSKLKEVYAAVSAKLEEEAAASGTVAADKATVGN
VLFDIEAKIVRTQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVVAT
LGTKGDEQNIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALAACL
PSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGNKF
AVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHILG
KMTSAVSGANTQLSEFAPRMITIKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDGVV
TIASTSSEGMAEAKKRIENITLEVEVGQVYEGTVLKLLDFGAIVNILPGKDGLLHISEIA
NERIKDINDYLKDGQQVKVKVIQTDEKGRVRLSAKALLNDGASSAPQGEPTPQ
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgttcagcaagatcgtcaaagaatttaagtggggacaacataacgttcgcctggaaacc
ggcgaaatcgcccgccaggcgagcggcgcggtgatcgtcgacgtcgaagacaccgttatc
ctggcgaccgtggtcggcgccaagaccgccaagccgggccaggacttcttcccgctgacc
gtcgactatctcgagaagacttacgccgccggcaagattccgggcggcttcttccgtcgc
gaaggccgtccgtcggaaggcgagacgctgatctcgcgcctgatcgaccgtccgctgcgt
ccgctgttcccggaaggcttctacaacgaagtccaggttgtgattcacgttctgtcgctg
aatccggacgttcccgctgacattcccgcgctgatcggcgcgtcggcggcactggccgtg
tccggtctgccgttcaacggcccggtcggcgcagcgcgcgtggcttacatcaacaacgaa
tacgtgctgaacccgacgcgtccgcaaatgaaggaatcggcgctcgacctgatcgtcgcc
ggtacggaacgcgcggtgctgatggtggaatcggaagcgcagcaactgagcgaagaggtg
atgctcggcggcgtggtgttcggccacgagcaaatgcagatcgcgatcgacgcgatccac
gatctggtccgtgaaggcggcaagccggaatgggattggcagccggccgcgaagaacgag
ccgctgatcgcacgcgtgacggaactggcgcaagccgaactgctcgcggcttaccagatt
cgcgacaagcaggcacgttcgagcaagctgaaggaagtctacgcagcggtttcggcgaag
ctggaagaagaagccgcggcaagcggcaccgtggcggccgacaaggcaacggtcggcaat
gtgctgttcgacatcgaagcgaagatcgtccgtacgcagatcctgaacggcgaaccgcgt
atcgacggccgcgacacgcgcaccgtgcgcccgatcgaaatccgtaccggcgtgctgccg
cgtacgcacggttcggcgctgttcacgcgcggcgagacgcaggcgctggtggtggccacg
ctcggcacgaagggcgacgagcagaacatcgacgcactcgaaggcgagtaccgcgagcgc
ttcatgctccactacaacatgccgccgttcgcgaccggcgaaacgggccgcgtcggttcg
ccgaagcgccgtgaaatcggtcacggccgtctcgccaagcgcgcgctggccgcatgcctg
ccgagcgccgacgaattcggctactcgattcgcgtcgtgtcggaaatcacggaatcgaac
ggttcttcgtcaatggcttcggtgtgcggcggctgcctcgcgctgatggacgccggcgtg
ccgatgaaggcgcacgtcgccggcatcgcgatgggcctgattctcgaaggcaacaagttt
gccgtgctgaccgacattctcggcgacgaagatcacctcggcgacatggacttcaaggtg
gcgggcacggaacaaggcgtgaccgcgctgcagatggacatcaagatccagggcatcacg
aaggaaatcatgcaggtcgctctcgcgcaagcgaaggaaggccgcatgcatatcctcggc
aagatgacgtcggccgtgtcgggtgctaacacgcaactgtccgagttcgcgccgcgcatg
atcaccatcaagatcaatccggaaaagatccgcgacgtgatcggcaagggcggttcggtg
atccgcgcgctgacggaagaaaccggcacgacgatcgatatttccgacgacggcgtcgtg
accatcgccagcacgagcagcgaaggcatggccgaagcgaagaagcgtatcgagaacatc
acgctcgaagtcgaagtgggccaggtgtacgaaggcacggtgctgaagctgctggatttc
ggcgcgattgtgaacattctgccgggcaaggacggtctgttgcatatctccgagatcgcg
aacgagcgcatcaaggacatcaacgactacctgaaggacggccagcaagtgaaggtcaag
gtcatccagacggacgagaagggtcgtgtgcgtttgtcggcgaaggcgttgctgaacgac
ggcgcgtcgagcgcgccgcaaggcgaaccgacgccgcagtaa
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