Burkholderia sp. HB1: AC233_11685
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Entry
AC233_11685 CDS
T04094
Name
(GenBank) single-stranded DNA exonuclease
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03410
Base excision repair
buq03430
Mismatch repair
buq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AC233_11685
03430 Mismatch repair
AC233_11685
03440 Homologous recombination
AC233_11685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
buq03400
]
AC233_11685
DNA repair and recombination proteins [BR:
buq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
AC233_11685
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
AC233_11685
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AC233_11685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ALE55265
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All DBs
Position
1:2705726..2707432
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AA seq
568 aa
AA seq
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MTRIVTRACSPVDAEILVRHGLHPVLARLYAARGVCLPDELETGLARLVPPAALKGCDEA
AALLADAIQQKRRMLVVADYDCDGATACAVAVRGLRMFGGKIDYLVPNRFEYGYGLTPEI
VALAAQSASGKPELLITVDNGIASVDGVEAANALGIDVLVTDHHLPGDQLPAARAIVNPN
QPGCEFPSKCIAGVGVMFYVLLALRAELRRRGAFGDDFPEPRLDGLLDLVALGTVADVVK
LDGNNRVLVAQGLQRIRKGKMQPGIAALFRAAARDARNASGFDLGFALGPRLNAAGRLSD
MSLGIECLTTDDIGRAWELAQQLDTMNRERREIEAGMQQQALDDLSSIDPDGATTITLFN
PAWHQGVIGIVAGRLKEKFHRPAFTFALADDSGQLVKGSGRSIAGFHLRDALDLISKREP
GMIVKFGGHAMAAGLTLSTADVPRFTAAFEAVGREWLSDDALSRTVETDGELEDAYFTPQ
FVDMLDAAVWGQGFPAPVFSGEFDVASQALVKDKHLKLQLMRGRQRFNAIWFNHTDTLPA
RTTVAYRLASDTWNGVSRVQLIVEHAVS
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atgacccgaatcgttacgcgcgcctgttctcccgtcgacgccgaaatcctcgtgcgccac
ggcctgcatccggtgctcgcgcgcctctatgcggcgcgcggcgtgtgcctgcccgacgag
ctcgaaaccggcctcgcgcgcctcgtgccgcccgccgcgctcaagggttgcgacgaggcc
gccgcgctgctcgccgacgccatccagcagaagcgccgcatgctggtcgtcgccgattac
gattgcgacggcgccaccgcctgcgcagtcgcggtgcgcgggctgcgcatgttcggcggc
aagatcgattacctcgtgccgaaccgctttgaatacggctatgggctcacgcccgagatc
gtcgcgctggccgcgcaaagcgcgtcgggcaagccggaactgctgatcaccgtcgataac
ggcatcgcgagcgtggacggcgtggaagcggcgaacgcgctcggcatcgacgtgctcgtc
accgatcaccatctgcccggcgaccagttgccggccgcgcgcgccatcgtcaatccgaat
cagccgggctgcgagttcccgagcaagtgcatcgcgggcgtgggcgtgatgttttacgtg
ctgctcgcgttgcgcgcggaattgcgccggcgcggcgcgttcggcgacgactttcccgag
ccgcgcctggacggcctgctcgatctggtcgcgctcggcaccgtcgccgatgtcgtgaag
ctcgacggcaataaccgcgtgctcgtcgcgcaaggtttgcagcgcatccgcaaaggcaag
atgcagccgggcatcgccgccctctttcgcgcggccgctcgcgacgcgcgcaacgcgtcg
ggcttcgacctcggcttcgcgctcggtccgcgcctgaacgcggccggacggctgtccgac
atgtcgctcgggatcgaatgcctgacaaccgacgacatcggccgcgcatgggaactcgcg
cagcagctcgacacgatgaaccgcgagcggcgcgagatcgaagccggcatgcagcagcag
gcgctcgacgacctctcgtcgatcgaccccgacggcgcgaccaccatcacgctgttcaat
ccggcgtggcatcagggcgtgatcggcatcgtcgcgggacggctgaaggagaagtttcac
cggcccgcgttcacgttcgcgctcgccgacgacagcggccagctcgtcaaaggctcgggg
cgttctatcgcgggctttcatctgcgcgatgcactcgatctgatctcgaagcgcgaaccc
ggcatgatcgtcaaattcggcggccacgcgatggccgcgggcctcacgctctcgaccgcc
gacgtgccgcgtttcacggccgcgttcgaagcggtcggccgcgaatggctgagcgacgac
gcgctgtcgcgcaccgtcgaaaccgacggcgaactcgaggacgcgtatttcacgccgcaa
ttcgtcgacatgctcgacgccgccgtgtggggccaaggctttccggcgccggtgttctcg
ggcgaattcgacgtggcgtcgcaggcgctcgtgaaggacaagcacctcaagctgcaactg
atgcgcggccgccagcgcttcaacgcgatctggttcaaccacacggacacgctgcccgcg
cgcaccacggtcgcgtaccggctcgcgagcgatacgtggaacggcgtgtcgcgcgtgcaa
ttgatcgtcgagcatgcggtgagctag
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