Burkholderia sp. HB1: AC233_11905
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Entry
AC233_11905 CDS
T04094
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
buq
Burkholderia sp. HB1
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buq03019
]
AC233_11905
Enzymes [BR:
buq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
AC233_11905
Messenger RNA biogenesis [BR:
buq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
AC233_11905
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
DEAD
AAA_22
nSTAND3
AAA_19
NACHT
AAA_30
T2SSE
AAA_23
PhoH
TsaE
Myosin_head
Motif
Other DBs
NCBI-ProteinID:
ALE55305
LinkDB
All DBs
Position
1:complement(2760989..2765383)
Genome browser
AA seq
1464 aa
AA seq
DB search
MSNVPKSPAAANENAAPAADQTKAGDAKRRADQDANRGKPDVPRKAREPNRAVSGGEASA
KEKSRAEQAEHAESRGSRGSGEAGEPREAREPRAPRQPQEPRGPRPPREPQQQRAPREPQ
QQRAPRQPQGARPPRPPREPRVVQPNPIPPIIFPEALPVSARRDEIAKAIAENQVVIVSG
ETGSGKTTQLPKICLALGRGLGAGGAGLIGHTQPRRIAASATGRRIAEELGTPFGEVVGY
KVRFTDNLSPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLLGYLKEI
LAKRADLKLIVTSATIDADRFARHFGSEEKPAPVIEVSGRLYPVEVRYRPVAEESPAIKA
AQGTSGSSGTSGASRGDRPKSPRESGKERDRDLMEAIVDAVDELCREGPGDVLVFLPGER
EIRDAAEALRKHHPPHTEILPLFARLSAAEQERVFRTSNARRIVLATNVAETSLTVPGIR
YVVDTGLARVKRYSYRNKVEQLQVEAISQAAANQRAGRCGRVADGICIRLYDESDYQSRV
RFTDPEILRSSLASVILRMKSLHLTAIETFPFIEPPPGRAIADGYQLLNELGAVDDDNQL
TPLGRELARLPLDPRVGRMILAARDQQSLKEVLIIASALSVQDPRDRPIEAQEQADQAHR
RFADERSEFLQWLKIWNWFDEAIAHKKSNKQLHEECRKNFLSQVRLREWRDVHSQLLTVV
REHGWRLNEAEATFEQIHLALLTGLLGNIGLKADDEPYYLGARGIKFYLWPGSALVKKAG
KWVMAAELVETSRLYARCIARIEPEWIEKIGAHLLKKSLSEPHWEKRAAQVSAFERAVLY
GLPIYHRRRVSFGKQDPARARELFIRGALVEGEFDTKLGFFAHNRKLLADIEQLEHKSRR
QDVLVDDELIFAFYDQALPKGIYTGAAFERWYRDEVKKSGQAEDKLRLLYLSRDDLMRHE
AAGVTTDLFPKRMTMSGVDMALSYHFEPGSPRDGVTLAVPLFALNQVDARRCEWLVPGML
KEKTHLLLKSLPQKLRRHCVPLPEYAAGFVDRHAAPRFAAGGLLEALIADVREQKQVALK
QADFKLETLPPHLFMNFKVVDEHGRQLAMGRNLSQLRAELGGQAQQHFQKIASSAAGAAL
ADVAGTRGQAAASAPAGAASRSKGAAPPGPQTATQGAGGTALYENLTTWNFGKLPELLEI
RRGGQTLFGYPALVDRGTHCDVEVFDSPDEAARIHRAGLRRLFALQLKEPIKYLEKNLPG
LREMAMQFMTRGTQEELRDQLIDTALDRACLQDPLPDDDVSFHTRRDEGRSRLTLLAQEI
ARLVGQILGEYASVLKKLVQAKSFTAAYADIQHQLDALIGKRFVVDTPYSQLTHFPRYLK
GIALRIDKLKADPARDARQFAEFQPLLQNYQRAVAQRGGVLDARLAEFRWLLEELRVSLF
AQELRTPMPVSVKRLYKVWDSMQR
NT seq
4395 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacccaaaagtcccgccgcggcgaacgagaatgcggcgccggccgccgat
caaacgaaggccggcgacgcgaagcgccgcgccgaccaggacgcgaaccgcggcaagccg
gacgtgccccgcaaggcgcgcgagccgaatcgtgccgtgtctggcggcgaggcgtccgcg
aaggaaaaaagtcgcgccgagcaagcggagcatgctgagtctcgcggatcgcgtgggtct
ggcgaagcaggcgagccgcgtgaagcacgtgaaccgcgtgcgccacgccagccgcaagaa
ccgcgtgggccgcgcccgccacgtgagccgcagcagcagcgcgcgccacgtgagccgcag
cagcagcgcgcgccacgtcagccacagggagcccgtccgccgcgtccgccacgcgagccg
cgtgtcgtccagccgaacccgattccgccgatcatcttccccgaagcgctgccggtatct
gcccgccgcgatgaaatcgcgaaggccatcgccgaaaaccaggtggtgatcgtgtccggc
gagaccgggtcgggcaagaccacgcagttgccgaaaatctgcctcgcgctcgggcgcggt
ctcggcgcgggcggcgccggtctgatcggccacacgcagccgcgccgcatcgccgcttcg
gcgacgggccggcgcatcgccgaggaactcggcacgccgttcggcgaagtggtcggctac
aaggtgcgcttcaccgacaatctgtcgccgggtgcatccgtcaagctgatgacggacggc
attctgctcgccgagacgcagaccgatccgctgctgaaggcgtacgacacgctgatcatc
gacgaggcgcatgagcgcagcctgaacatcgatttcctgctcggctacctgaaggaaatc
ctggcgaagcgtgccgatctgaagctgatcgtgacgtcggcgacgatcgatgccgaccgc
ttcgcgcgccacttcggcagcgaagagaagcccgcgccggtgatcgaagtgagcgggcgg
ctgtatccggtcgaagtgcgctaccgtccggtcgcggaagaaagcccggcgatcaaggcg
gcgcagggcacgtcgggctcgtcgggtacgtctggcgcgtcgcgtggcgaccggccgaaa
agcccgcgcgaatccggcaaggagcgcgaccgcgatctgatggaagcgatcgtcgacgcc
gtcgacgaactgtgccgcgaaggccccggcgacgtgctcgtcttcctgccgggcgagcgc
gaaattcgcgacgccgccgaggcgctgcgcaagcaccatccgccgcatacggaaatcctg
ccgctgttcgcgcgcctttccgccgccgagcaggagcgcgtgttccggacctcgaacgcg
cgccgcatcgtgctcgcgacgaacgtcgcggaaacctcgctgacagtgcccggcattcgc
tacgtggtcgacacaggcctcgcgcgcgtgaagcgttattcgtatcggaacaaggtcgag
cagttacaggtcgaggcgatctcgcaggccgccgcgaatcagcgggcagggcgctgcggg
cgggtggccgacggcatctgcattcgtctttacgacgagagcgattatcagagccgcgtg
cgctttaccgatccggagattttgcgctcgtcgctggcgtcggtgatactgcgcatgaag
tcgctgcatctgaccgcgatcgagacgtttccgtttatcgagccgccgcctggccgcgcg
atcgccgacggctatcaactgctgaacgaacttggggccgtcgacgacgacaatcagctc
acgccgctcggccgcgaactcgcgcgtctgccgctggacccgcgcgtcggccggatgatt
ctcgctgcccgcgatcagcagtcgctcaaggaagtgctgatcatcgcgagcgcgttgtcg
gtgcaggacccgcgcgaccgtccgatcgaggcgcaggagcaggccgaccaggcgcatcgc
cgttttgccgacgagcgctcggaattcctgcagtggctgaaaatctggaactggttcgac
gaagccatcgcgcacaagaagtcgaacaagcagttgcacgaggaatgccggaagaacttt
ctgtcgcaagtgcgtctgcgggaatggcgcgacgtgcattctcaattgctgacggtcgtg
cgcgaacacggctggcgtctgaacgaagccgaggcgaccttcgagcagatccatcttgcg
ctgttgacgggtctgctcggcaacatcggtctcaaggccgacgacgagccgtattacctc
ggcgcgcgcggcatcaagttttatctgtggccgggctcggcgctcgtgaagaaggcgggc
aagtgggtgatggccgcggaactggtcgagacgagccgtctgtacgcgcgctgcatcgcg
aggatcgagcccgagtggatcgagaaaatcggcgcgcatctgctgaagaaatcgctgtcc
gagccgcattgggagaagcgcgcggcgcaggtgtcggccttcgagcgcgcggttttgtac
gggctgccgatctatcaccggcgccgcgtgagcttcggcaagcaggacccggcgcgggcg
cgcgagctgtttatccgcggcgcgcttgtcgaaggcgaattcgacacgaagctcggattt
ttcgcgcacaaccgtaagctgctcgccgacatcgaacaactggaacacaagtcgcgtcgc
caggacgtgctcgtcgacgatgagctgattttcgcgttctacgatcaggcgctgccgaag
ggcatttacacgggcgcggcgttcgagcgctggtatcgcgacgaggtgaaaaagagcggc
caggcggaggacaaactgcgcctgctgtatctgtcgcgcgacgatctgatgcgccacgaa
gccgcgggcgtgacgaccgatctgttcccgaaacggatgacgatgtcgggtgtcgacatg
gcgcttagctaccacttcgagccgggttcgccgcgcgacggcgtcacgctcgccgtgccg
ctcttcgcgctgaatcaggtcgacgcgcggcgctgcgagtggctcgtgcccggcatgctg
aaggagaagacgcacctgctgctgaagtcattgccgcagaagttgcggcgccactgcgtg
ccgctgccggaatacgcggctggtttcgtcgaccggcacgccgcgccgcgttttgccgcg
ggcggcttgctcgaagcgctgatcgccgatgtgcgcgagcaaaagcaggtcgcgctgaag
caggcggatttcaagctcgaaaccttgccgccgcatctgttcatgaacttcaaggttgtc
gacgagcacgggcggcaactcgcgatgggccgcaacctgtcgcagttgcgcgcggaactc
ggcgggcaggcgcagcagcatttccagaagattgcgtcgagcgcggcgggtgcggcgctc
gcggatgttgcgggcacgcgcggccaggcggcggcatctgcgccggccggtgcggcgtcg
cgcagcaagggcgcagcgccgccggggccgcagactgcgacgcaaggcgccggcggcacc
gcgttgtacgaaaacctgacgacgtggaatttcggcaagctgcccgagttgctcgaaatt
cgccgcggcggacagacgcttttcggttatccggctctagtggatcgcggtacgcattgt
gatgtcgaagtgttcgattcgcccgatgaggcggcgcggattcatcgcgcgggtctgcgt
cggctattcgctttgcagttgaaggaaccgatcaagtatctcgagaaaaatctgccgggc
ttgcgcgaaatggcgatgcagttcatgacgcgcggcacgcaggaagagttgcgcgatcag
ttgatcgacaccgcgctcgatcgtgcgtgcctgcaagatccgttgccggacgacgacgtg
agcttccatacgcgccgcgatgaagggcgcagccggctcacgttgctggctcaggagatt
gcgcggctggtcgggcagattctcggcgaatacgcgagcgtgctgaaaaagctcgtgcag
gcgaagtcgttcacggcggcgtacgccgatatccagcatcaactggacgcgctgatcggc
aagcggttcgtggtggatacgccgtattcgcaactgacgcatttcccgcgctatctgaag
ggtattgcgctgcggatcgacaagctgaaagcggacccggcgcgcgatgcacggcagttc
gccgaattccaaccgttgttgcagaactatcagcgcgcggtcgcgcagcgcggcggcgtg
ctggatgcgcgtcttgccgaattccgctggctgctggaggaattgcgcgtttcgctgttc
gcgcaggagttgcgcacgccgatgcctgtgtcggtcaagcggctttataaggtttgggat
tcgatgcagcggtga
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integrated database retrieval system
