Burkholderia sp. HB1: AC233_15050
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Entry
AC233_15050 CDS
T04094
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AC233_15050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buq03019
]
AC233_15050
Enzymes [BR:
buq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AC233_15050
Messenger RNA biogenesis [BR:
buq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AC233_15050
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Sacchrp_dh_NADP
HI1480
P-loop_SecA
CMS1
DegT_DnrJ_EryC1
Motif
Other DBs
NCBI-ProteinID:
ALE55838
LinkDB
All DBs
Position
1:3442249..3443781
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AA seq
510 aa
AA seq
DB search
MSFDSLGLSEPLVRAVHELGYTTPTPIQTQAIPAVLNGGDLLAGAQTGTGKTAGFTLPIL
QRLNSMPANTSASGKRAVRALILTPTRELAAQVEESVRAYGKYLKLKSTVMFGGVGINPQ
IGALRSGVDIVVATPGRLLDHMQQKTIDLSHLEILVLDEADRMLDMGFIHDIKRVLAKLP
PKRQNLLFSATFSDEIKTLADNLLDSPALIEVARRNTTAETVAQKIHPVDRDKKRELLTH
LIKQHNWFQVLVFTRTKHGANRLAEQLTKDGISALAIHGNKSQSARTRALAEFKDGTLQV
LVATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDELQLLK
DIEKLIKRPVPQEVIAGFEPDPTAKPEPILRRGQGGGGGGGRSPRQGQGAPKGGNGGAAK
PAQRSGQRPANAQQQPKPQGAKPAGNGGQPRRDGQRQDDRPRAIAHEGSAAQHAPRKPQG
GNPGALLGGAKSRNDSPRGGNPARSGQRGR
NT seq
1533 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctcggcttgtccgaaccgttggtccgcgctgtacacgaactcggc
tacaccactccgactcctatccagactcaggcgattccggctgtgctcaacggcggcgat
ctgctggccggcgcgcaaaccggcaccggcaagacggccggctttacgctgccgatcctt
cagcgtctgaactccatgccggcgaacacgtcggcgtcgggcaagcgcgccgtgcgcgcg
ctcattctcacgcccacgcgcgaactcgccgcgcaggttgaagaaagcgtgcgtgcctat
ggcaaatatctgaagctgaagtcgaccgtgatgttcggtggcgtcggcattaatccgcag
atcggtgcattgagaagcggcgtggacatcgtcgtcgcaacgccgggccgtttgctcgac
cacatgcagcagaagaccatcgacctgtcgcatctcgagattctcgtgctcgacgaagcc
gaccgcatgctcgacatgggcttcatccacgatatcaagcgcgtgctcgcgaagctcccg
cccaagcgccagaacctgctgttctcggccacgttctccgacgagatcaagacgctcgcc
gacaacctgctcgactcgccggcgctaatcgaagtcgcgcgccgcaatacgacggcggaa
accgtcgcgcaaaaaatccacccggtggatcgcgacaagaagcgcgagttgctcacgcac
ctgatcaagcagcacaactggtttcaggtgctggtgttcacgcgcaccaagcacggcgcg
aatcgccttgccgagcagttgacgaaggacggcatcagcgcgctcgccattcacggcaac
aagagccagtcggcgcgcacgcgcgcgttggccgagttcaaggacggcacgctgcaggtt
ctggtggcgaccgatatcgccgcgcgcggcatcgacatcgatcagttgccgcacgtcgtc
aacttcgacttgccgaatgtgccggaagattacgtgcaccgcatcggccgtacgggccgc
gcgggcgcgacgggcgaagcggtgtcgctcgtgtgcgtcgacgaattgcagttgctgaag
gacatcgagaagctgatcaagcgtccggtgccgcaggaagtgatcgccggtttcgaaccg
gacccgactgcgaagccggagccgattctgcgccgcggccagggcggcggcggtggcggc
ggacgttcgccgcgccagggtcaaggcgcgccgaagggcggcaacggcggcgcggcaaag
ccagcgcaacgctcggggcaacgtccggcgaacgctcagcagcagccgaagccgcaaggc
gcgaagccggccggcaacggcggccagccgcgccgcgacggtcagcgtcaggacgatcgt
ccgcgcgcgattgctcatgaaggtagcgccgcgcagcacgcgccgcgcaaacctcagggt
ggcaatccgggcgcattgctcggcggcgcaaagtcacgcaacgactcgccgcgcggtggc
aatccggcgcgcagcggtcagcgcggtcgctaa
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