Burkholderia sp. HB1: AC233_20745
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Entry
AC233_20745 CDS
T04094
Name
(GenBank) RNase II stability modulator
KO
K14051
c-di-GMP phosphodiesterase Gmr [EC:
3.1.4.52
]
Organism
buq
Burkholderia sp. HB1
Pathway
buq02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
AC233_20745
Enzymes [BR:
buq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.52 cyclic-guanylate-specific phosphodiesterase
AC233_20745
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Gene cluster
GFIT
Motif
Pfam:
EAL
GGDEF
PAS_9
PAS_4
PAS
PAS_8
Diguanyl_cycl_sensor
GGDEF_2
PAS_3
Motif
Other DBs
NCBI-ProteinID:
ALE56911
LinkDB
All DBs
Position
2:163635..165638
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AA seq
667 aa
AA seq
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MNDDQHEQVLFAQFGTSSPCWRLSSDSNALELTPVTGDVPANVAIPLNPQQASQIRCLTG
ITSHVVLDVRLFGEPLRLHLVGRKINSISWAGTASAYDDTESVARDLMHGLSFAEQVVSE
VNSVVVIVDRHGRIQRFNRLAEELTGVKEENIIGRNVWALFMSSEDGAASSQNIAGFFNR
GVSYEVERRVKTLHGERLFLFRNKFVQSGSGIDEQYLICSGTDITEERLAQERLRQLANT
DSLTGLPNRNAIQDYIRTAIEEAAPGESVGVLFLDLDNFKKVNDHYGHVFGDRLIRDVSA
AIGMCLNEGDTLARLGGDEFIVLAAKGTAHELEATAQRILERMRTPFSLGLVEVYTGCSI
GIARYPEHGDNLESLIRSADTAMYVAKDEGKRTHRVFSPEMNRKVAEYMWLDTNLRRGLD
EGQLTLHYQPKLVLSTGVVQGVEALVRWNSPERGQIMPAEFIRYAEESGLIGVLGRWVME
TAAKQAAKWKADGYNLRIAINVSARQLVDTAVVRHFTEALAAANLEPCLVDVELTESCLI
EDEAAAIDLIKHFRQIGAQVHLDDFGTGYSSLSQLGRIPLDVIKLDRSFVRSINADTKAQ
ALVRSMVVVAQELGFKVVAEGIETESEEAFMKGLGVEYVQGYLYAHPMPAADFERWLQDR
QKLRLIA
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaatgacgaccaacacgagcaggtgctttttgcgcagttcggcacaagcagcccttgc
tggcgtctgtcgagcgacagcaacgcgctcgaactgacgccagtcaccggggacgtgccg
gccaacgtggccattccgctgaatccccagcaggcatcgcaaatccgttgcctcacgggc
atcacctcgcatgtggttctcgacgttcgcctgttcggcgagccgctgcggctgcatctc
gtcggcagaaaaatcaacagcatcagttgggcgggcacggcctcggcttatgacgacacg
gagtcggtcgcgcgcgatctgatgcatggtttgtcgttcgccgagcaggtcgtgtcggaa
gtcaattcagtggtcgtgatcgtcgaccggcatgggcgaatccagcgctttaaccgcctc
gccgaagagctcacgggcgtgaaggaagagaacatcatcgggcgcaatgtgtgggcgctg
ttcatgtcctcggaagacggcgcggcgtcgagtcagaacattgcgggcttcttcaatcgc
ggcgtgtcgtatgaagtcgagcggcgcgtgaagacgctgcacggcgagcggctcttcctg
tttcgcaacaagttcgtgcaaagcggcagcggcatcgacgagcaatatctgatctgctcg
ggcaccgacatcaccgaagaacgtctcgcgcaggaacgcctgaggcaactcgccaacacc
gactcgctcaccggcctgccgaatcgcaatgcgattcaggactacattcgcaccgcgatc
gaagaagcggcgcccggcgaatcggtgggcgtgctgtttctcgatctcgacaacttcaag
aaggtcaacgatcactacggccacgtattcggcgaccgtctgattcgcgacgtgtcggcc
gccatcggcatgtgcctgaacgaaggcgacacgctcgcgcggctcggcggcgacgagttc
atcgtgcttgcggcaaaaggcacggcgcacgaactggaagcgaccgcgcagcgcatcctc
gaacgcatgcgtacgccgttcagccttgggctcgtcgaagtctatacgggctgctcgatc
ggcatcgcgcgctatccggaacacggcgacaacctcgagtcgctgatccgctcggccgat
accgccatgtacgtcgccaaggacgaaggcaagcgcacgcatcgcgtgttctcgccggag
atgaaccgcaaggtcgccgagtacatgtggctcgacacgaacttgcggcgcggcctcgac
gaaggccaactgacgctgcactatcagccgaagctggtgctttcaaccggcgtggtgcaa
ggcgtggaagcgctggtccgctggaattcgccggagcgcgggcagatcatgccggccgaa
ttcattcgttatgccgaggagtcgggactgatcggcgtgctcggccgctgggtcatggaa
acggccgccaaacaggccgccaaatggaaagcggacggctacaacctgcgcatcgccatc
aacgtgtcggcgcggcaactggtggacaccgccgtggtccggcatttcaccgaagcgctc
gccgcggccaatctcgagccgtgcctcgtcgatgtcgagttgaccgagagctgcctgatc
gaagacgaagccgcggccatcgacctcatcaagcacttccgccagatcggcgcgcaggtg
catctggacgacttcggcaccggctattcgtcgctgtcgcaactgggccgcattccgctc
gacgtcatcaagctcgaccgcagtttcgtgcgctcgatcaacgccgatacgaaagcgcaa
gcgctggtgcgctcgatggtcgtggtcgcgcaggaactcggcttcaaggtggtcgccgaa
ggcatcgagaccgaatcggaagaagccttcatgaaggggctgggcgtcgagtatgtgcaa
ggctacctgtacgctcacccgatgcccgccgccgatttcgagcgctggttgcaggaccgg
cagaagctcaggctgatcgcctga
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