Burkholderia sp. HB1: AC233_25130
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Entry
AC233_25130 CDS
T04094
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
buq
Burkholderia sp. HB1
Pathway
buq02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
buq00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
AC233_25130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buq03021
]
AC233_25130
Transcription machinery [BR:
buq03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
AC233_25130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
ALE57771
LinkDB
All DBs
Position
2:complement(1131020..1133062)
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AA seq
680 aa
AA seq
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MTKKLNEVPVDDDATQSEETPVAAPGKVEKAKARDRRAKEKALLKDAFSSSQPGTVEELE
ERRSKLRALIKLGKERGFLTYAEINDHLPDNFTETEAIEGIISTFNDMGVAVYEQAPDAE
TLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEI
AKRIEDGLKHMVMAISACPTTIADILAMAERVANEEIRIDELVDGLIDADAEDADGFSVQ
EAEAIESEDEEEEEEDEEDEEEDDGTAQATANAAQMEALKRASLEKFALISEWFDKMRRA
FEKEGYKSKSYLKAQETIQNELMTIRFTARTVERLCDTLRAQVDEVRQVERQILHTVVDK
CGMPRAEFIARFPGSETDLEWADKIVSEGHPYSAILTRNIPAIREQQQRLLDLQARVVLP
LKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQET
GLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADA
ALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKA
LRKLRHPSRSDKLKSFLEGN
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaaaagctgaatgaagtacccgtcgatgacgacgcaacccaaagcgaagaaacc
cctgtggccgctcccggcaaagtggaaaaggccaaggctcgcgaccgccgtgcgaaagaa
aaggcgctgctgaaagacgcgttttcgtcgtcgcagcccggcacggtcgaggaactggaa
gagcgtcgttcgaaactgcgcgcgctgatcaagctcggcaaggagcgcggcttcctcacg
tacgctgaaatcaacgatcacctgccggacaacttcaccgagaccgaggcgatcgaaggc
atcatcagcacgtttaacgacatgggcgtggctgtctacgagcaggcgcccgatgccgaa
acgctgctgctgaacgacaacgctccggccgcttcgtcggacgacgaagtggaagaggaa
gccgaagtcgcgctctccaccgtcgactccgaattcggccgcacgaccgaccccgtccgc
atgtacatgcgcgaaatgggcacggtcgagttgctcacgcgtgaaggcgaaatcgagatt
gcgaagcggatcgaagacggcctgaagcacatggtgatggccatctccgcgtgcccgacc
acgatcgccgacattctggccatggccgagcgcgtcgcgaatgaggaaatccgcatcgac
gaactggtcgacggcctgatcgacgccgacgcggaagacgcggacggcttctcggtgcag
gaagcggaagccatcgagagcgaagacgaggaagaagaggaagaggacgaagaggacgag
gaagaagacgacggcaccgcgcaggccacggccaacgcagcgcaaatggaagcgctcaag
cgtgcgtcgctcgaaaagttcgccctcatcagcgaatggttcgacaagatgcgtcgcgcg
ttcgagaaggaaggctacaagtccaagtcctatctgaaggcgcaggaaaccatccagaac
gagctgatgacgatccgcttcaccgcgcgtaccgtcgagcgtctgtgcgacacgttgcgc
gcgcaagtggatgaagtgcgtcaggtcgagcgtcagattctgcacaccgtcgtcgacaag
tgcggcatgccgcgcgccgaatttatcgcgcgtttcccgggtagcgaaacggatctcgaa
tgggccgacaagatcgtcagcgaagggcatccgtatagcgcgatcctcacgcggaacatt
ccggccattcgcgagcagcaacaacgtctgctggatttgcaggcgcgtgttgtactgccg
ctgaaggacctgaaggaaaccaaccgtcagatggcggcgggcgaactgaaggcgcgtcag
gccaagcgcgaaatgaccgaggcgaatttgcgtctcgtgatctcgattgcgaagaagtac
acgaaccgcggtctgcagttcctcgacctgattcaggaaggcaacatcggcttgatgaag
gcggtggacaagttcgaatatcgtcgtggctacaagttctccacgtatgcaacgtggtgg
attcgccaggccattacgcgttcgatcgcggaccaggcgcgcaccatccgcattccggtt
cacatgatcgagacgatcaacaagatgaaccgcatctcgcgtcagatcttgcaggaaacc
ggtctcgagccggacccggcaacgctggccgagaagatggaaatgccggaagacaagatc
cgcaagatcatgaagatcgcgaaagagccgatctccatggaaacgccgattggtgacgac
gacgattcgcatcttggcgacttcatcgaagacacgaacacggtcgcgcccgcagacgcc
gcgttgcacgcgagcatgcgcgatgtcgtgaaagacgtgctcgattcgctgacgccgcgt
gaagccaaggtgttgcgcatgcgtttcggtatcgagatgagcactgaccacacgctcgag
gaagtcggcaagcaattcgacgtcacgcgtgagcggattcgtcagatcgaggcgaaggcg
ctgcgcaagctgcgtcacccgagccggtccgacaagctgaagtcgttccttgaagggaac
tga
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