Burkholderia lata: Bcep18194_A4688
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Entry
Bcep18194_A4688 CDS
T00286
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
bur
Burkholderia lata
Pathway
bur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcep18194_A4688
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bur03019
]
Bcep18194_A4688
03016 Transfer RNA biogenesis [BR:
bur03016
]
Bcep18194_A4688
Enzymes [BR:
bur01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bcep18194_A4688
Messenger RNA biogenesis [BR:
bur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bcep18194_A4688
Transfer RNA biogenesis [BR:
bur03016
]
Prokaryotic type
tRNA degradation factors
Bcep18194_A4688
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
HTH_12
CSD
Motif
Other DBs
NCBI-ProteinID:
ABB08283
UniProt:
Q39GY3
LinkDB
All DBs
Position
1:1683390..1685876
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AA seq
828 aa
AA seq
DB search
MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKAKVGQVV
VVELTDFPSRHSQPLGRVVEVLGDIDDPGMEIEIAVRKYGVPHEFSQPALDEAAALPDKV
RPTDLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGYRLIVAIADVSHYVQPG
SGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRADILPHLQDLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILSGKKYTPKAPDGFELNTALSPR
ARAMQQADDESRGRSRSNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPSPVPASAGGGVDRGNGPRVRALPQAEEPAPRR
KKAASAPSVAVNEARAARAAAKKKGGSGSGGGAAAKPTAKKTRARKKY
NT seq
2487 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgacgcgccgctggccgccaacgacatcgccgaagcactgtcgatcaagcgtcaggag
cgcgaggggttcttccggcgtgtcgccgcgatggaacgcgacggccagatccgcctcgac
aagcgcggccattaccagttgacccatccgtcgaacttcgtcgccgggcgcgtgcagggg
catcgcgacggctacgggttcgtgatccgcgacgacggccaggacgacctgtttttgccg
aacggcgaaatgcagaaggtgatgcacaacgatcgcgtgctcgcacggatcgtcggctac
gatcgtcgcggccgcccggaagggcacgtcgtcgaagtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtcgcaccggaagacaagcgc
atcggccatgacatcctgatcacgcagaacgtgaagaaggcgaaggtcgggcaggtcgtc
gttgtcgagctgaccgatttcccgagccgccattcgcagccgctcggccgtgtcgtcgag
gtgctcggcgacatcgacgatccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcacgaattcagccagccggcgctcgacgaagccgccgcgctgcccgacaaggtg
cggccgaccgacctgcgtttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcccgcgacttcgacgacgccgtctactgcgagccggtcaaggtcggccgc
ggcgacggctaccgcctgatcgtcgcgatcgccgacgtgtcgcactacgtacagccgggc
agcgggctcgatgccgacgcgctcgagcgcagcacgtcggtctacttcccgcgccgtgtg
attccgatgctgccggagaagctgtcgaacggcctgtgctcgctgaatccgcaggtcgac
cgctgcgtgctcgcgtgcgacatggtgatcaccgcgcgcggcgagatcaaggcgtaccag
ttttatccggccgtcatccattcggctgcgcgcctcacgtacaccgaagtcgcggccgtg
ctgtcgaacacgaaggggccggaggcggcgcgccgcgcggatattctgccgcacctgcag
gatctgtacggcgtctacaagtcgctgttcgccgcgcggcagaagcgcggcgcgatcgac
ttcgacacgaccgagacctacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgccagcgtaacgacgcgcacaagctgatcgaggaatgcatgctggccgcgaacgtc
tgcgcggccgatttcctgaagcgcaacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgcgcgttcctgcgcggcatgggcctttcgctc
ggtggcggcgacaagccgcatgcgagcgactacgcggcgctgatggcgcagatccgcgac
cggcccgatgcgcagatgctgcagccgatgttgctgcgctcgatgcagcaggccgtctac
agcccggacaacatcggtcacttcggcctggcctacgaggcatacgcgcacttcacgagc
ccgatccgccgttatccggacttgctcacgcaccgcgcgatctacgcgatcctgtccggc
aagaagtacacgccgaaggcgccggacggtttcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgaatcgcgcggccgctcgcgctcgaacacggcg
atctgggaagaactcggcctgcactgctcggcgaacgagcgccgcgcggatgaagcatcg
cgcgacgtcgaagcctggctcaagtgctacttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctcttc
atcgaagggctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaacgagctgcgtggcgaacgcacgggcatccgttatcgcctgtcggatcgcgtgcgc
gtgcaggtgagccgcgtcgatctcgatgcacgcaagatcgatttccggctcgtgcgcgat
acgccggtgaaggcgccgcgtccgtcgcccgtgccggcttccgcgggtggcggtgtcgac
cgcggcaatggtccgcgcgtacgcgcactgccgcaggcggaggagcccgcgccgcgccgc
aagaaggccgcaagcgcgccgagcgtcgcggtgaatgaagcgcgcgccgcgcgtgccgcc
gcgaagaagaagggcggcagcggcagcggtggcggtgcggcggcgaagccgaccgcgaag
aagacacgcgcccgcaagaagtattga
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