Burkholderia lata: Bcep18194_A5998
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Entry
Bcep18194_A5998 CDS
T00286
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
bur
Burkholderia lata
Pathway
bur03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
bur00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bcep18194_A5998
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
bur03019
]
Bcep18194_A5998
Enzymes [BR:
bur01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bcep18194_A5998
Messenger RNA biogenesis [BR:
bur03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bcep18194_A5998
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Sacchrp_dh_NADP
CMS1
DegT_DnrJ_EryC1
Cas3-like_C_2
MerR-DNA-bind
CARD_2
Ric8
Motif
Other DBs
NCBI-ProteinID:
ABB09592
UniProt:
Q39D74
LinkDB
All DBs
Position
1:3131668..3133122
Genome browser
AA seq
484 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYADNRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSNLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIAGFEPDPHAKPEPIQQRRGQQQPRSGGGGGGNRQPRAGGSGQPAAK
RDGNAQPKASPQKAAKPRAQGQGQGGAGGSGGRPAGGGNSARPANGNAAHPNRNRSSRSG
QRGH
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcttggccgaaccgctggtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggcgatcccggccgtcctcggcggcggcgac
ctgctcgccggcgcgcagacgggcaccggcaagaccgccggcttcacgctgccgatcctg
caacgcctgcatacgttctacgcggacaatcgcggcgcgaagcgcgcggtgcgtgcgctg
atcctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtccgtgcgtacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccgggccgcctgctcgatcac
atgcagcagaagacgatcgacctgtcgaatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
cagcgccagaacctgctgttctcggccaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgactcgcccgcgctgatcgaggtcgcacgccgcaacacgaccgccgaaagc
gtcgcgcagaagattcacccggtcgaccgcgaccgcaagcgcgaactgctcacgcacctg
atccgcgaacacaactggttccaggtgctcgtgttcacccgcacgaagcacggcgcgaac
cggcttgccgagcagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgtacgcgcgcgctggccgagttcaagaacagcacgctgcaggtgctc
gtcgcaaccgatatcgccgcgcgcgggatcgacatcgaccagctgccgcacgtcgtcaac
ttcgacctgccgaacgtgccggaagactacgtgcaccggatcggccgcacgggccgcgcg
ggtgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgaaaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcgcgggcttcgaacccgat
ccgcacgcgaagccggagccgatccagcagcgccgcgggcagcagcagccgcgcagcggt
ggcggtggcggcggcaatcgccagccgcgcgcaggcggctcaggccagccggccgcgaaa
cgcgacggcaatgcgcaaccgaaggcttcgccgcagaaggccgcgaagccgcgcgcgcaa
gggcaaggccaaggcggcgccggcggcagcggcgggcgtccggccggtggcggcaacagc
gcccgcccggcgaacggcaatgccgcgcacccgaaccgcaaccgttcgtcgcgcagcggc
cagcgcggtcactga
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