Burkholderia lata: Bcep18194_B2417
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Entry
Bcep18194_B2417 CDS
T00286
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
bur
Burkholderia lata
Brite
KEGG Orthology (KO) [BR:
bur00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
bur03016
]
Bcep18194_B2417
Enzymes [BR:
bur01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Bcep18194_B2417
Transfer RNA biogenesis [BR:
bur03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Bcep18194_B2417
Prokaryotic type
tRNA splicing ligases
Bcep18194_B2417
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4514
Hexapep
Motif
Other DBs
NCBI-ProteinID:
ABB12528
UniProt:
Q392T8
LinkDB
All DBs
Position
2:2752680..2753966
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AA seq
428 aa
AA seq
DB search
MNGQARRTGAVPHEQGSKVMNMSEMDYQVMELANGKPVKMWTQGVAVEDEARAQLRNTAQ
MPFIFSHVAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMMAARTTLTASDLPDS
LAGLRSAIERAVPHGRAPGRRDPGAWGDRTPAAVTESWKSLQPGFQRIVDKYPKLEKTNH
YAHLGTLGTGNHFIEVCVDEADHVWFMLHSGSRGVGNAIGSLFIELAQADMRQHIANLPD
RNLAYFTEGSRHFDDYVEAVGWAQDYARRNRQAMMDAVIGAARGVIAKPFSVDEHAVNCH
HNYVQRERHFGEDVLVTRKGAVSAQKGQLGIIPGSMGAKSFIVRGLGNPDSFCSCSHGAG
RTMSRTEAKRRFTVDDQVKATQGVECRKDAGVVDEIPMAYKDIDAVMAAQRSLVEVVHTL
RQVVCVKG
NT seq
1287 nt
NT seq
+upstream
nt +downstream
nt
atgaatggacaggcacggcgcacgggcgccgtgcctcacgaacaaggtagcaaggtgatg
aacatgagtgaaatggattaccaggtgatggaactggccaacggcaagccggtgaagatg
tggacgcaaggcgtcgccgttgaagacgaagcacgcgcgcaactgcgcaacaccgcgcag
atgccgttcatcttcagccacgtcgcggtgatgccggacgtccacctcggcaagggctcg
acgatcggcagcgtgattccgacgaagggcgcgatcattccggccgcggtcggcgtcgac
atcggctgcggaatgatggccgcgcgcacgacgctgacggcgtccgacctgccggattcg
ctcgcgggcctgcgcagtgcgatcgaacgcgcggtgccgcacggccgcgcgccgggccgc
cgcgatccgggcgcgtggggcgaccgcacgccggccgccgtgaccgaatcgtggaagtcg
ctgcaaccgggcttccagcggatcgtcgacaagtatccgaagctggagaagacgaaccac
tacgcgcacctcggcacgctcggcaccggcaatcacttcatcgaagtgtgcgtcgacgaa
gcggaccacgtgtggttcatgctgcacagcggctcgcgcggcgtcggcaatgcgatcggc
agcctgttcatcgaactcgcgcaggccgacatgcggcagcacatcgcgaacctgccggat
cgcaacctcgcgtatttcaccgagggcagccggcacttcgacgactacgtcgaagcagtc
ggctgggcgcaggactacgcgcgccgcaaccggcaggccatgatggacgcggtgatcggt
gcagcacgcggcgtgatcgcgaagccgttctcggtcgacgagcacgcggtgaactgccac
cacaactacgtgcagcgcgaacgccacttcggcgaggacgtgctcgtgacccgcaagggc
gcggtgtccgcgcagaaggggcagctcgggatcattccgggctcgatgggcgcgaagagc
ttcatcgtgcgcgggctcggcaacccggacagcttctgctcgtgcagccacggcgcgggc
cggacgatgagccgcaccgaagcgaagcgccgcttcacggtcgacgaccaggtgaaagca
acccagggcgtcgaatgccggaaggacgcgggcgtcgtcgacgaaatcccgatggcctac
aaggacatcgatgcggtgatggcggcccagcgcagccttgtcgaagtggtgcatacgctg
cgccaggtggtgtgcgtgaaaggatag
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