Burkholderia sp. FERM BP-3421: Bsp3421_003405
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Entry
Bsp3421_003405 CDS
T11127
Name
(GenBank) 3'-5' exoribonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03030
DNA replication
burf03430
Mismatch repair
burf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bsp3421_003405
03430 Mismatch repair
Bsp3421_003405
03440 Homologous recombination
Bsp3421_003405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burf03032
]
Bsp3421_003405
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_003405
Enzymes [BR:
burf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bsp3421_003405
DNA replication proteins [BR:
burf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Bsp3421_003405
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Bsp3421_003405
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_T
Cho_C
GIY-YIG_UvrC
Rv2179c-like
TPR_TmcB
DUF6344
GIY-YIG
Motif
Other DBs
NCBI-ProteinID:
WDD93330
LinkDB
All DBs
Position
1:181791..182921
Genome browser
AA seq
376 aa
AA seq
DB search
MSESQLLHPATDAPIVFVDLETTGGSAADHRITDIGIVEVGADGTLSTWTTLVNPLQSIP
PFIQQLTGITNEMVRDAPTFDTLAPALFERLDGKLFIAHNASFDRGFLRAEFQRVGLAFN
PDVLCTVRLSRALFPRDARHGLDALIERHGLVPSARHRALADADLIWQFWRRLHDQVPVE
RLREQIARTTRHYRLAGSVTEELLESAPAGHGAYALFGEDDAPLYVARSVRVRQRLRSLL
TGERRSAKELRIAAQVRRVAWRETPGELGAMLAEAAWIAELTPQFNRKPTEAKARGRAGE
LPWPFTGPVVFEEQGAVSGFHVIDRWRYLGAVRSIAEAAAIVAAGADGAFVPAVQRILQT
HLARGLQLVPLAPAAA
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatcgcaattgctccacccggcgaccgacgcgccgatcgtgttcgtcgacctg
gaaacgacaggcggctccgccgccgaccaccgcatcaccgacatcggcattgtcgaggtc
ggcgcggatggcaccctgtccacctggacgacgctcgtcaatccgctgcaatccattccg
ccgttcatccagcagctcaccggcatcaccaacgagatggtgcgggatgcgccgaccttc
gacacgctcgcgcccgcgctgttcgagcgtctcgacggcaagctgttcatcgcgcataac
gccagcttcgatcgcggcttcctgcgcgcggaattccagcgcgtgggcctcgccttcaat
cccgacgtgttgtgcacggtgcgcctgtcgcgcgcgctgtttccgcgcgatgcgcgccac
gggctcgacgcgttgatcgaacggcatgggctcgtgcccagcgcacgccaccgtgcgctc
gccgacgccgacctgatctggcagttctggcgacgcctgcacgatcaggtgccggtcgag
cggctgcgcgaacagatcgcgcgcacgacgcgtcattaccggctggcgggaagcgtgacc
gaggaactgctggagtccgcgcccgccggacacggcgcctatgcgctgttcggcgaggac
gacgcgccgctctatgtcgcgcgcagcgtgcgggtccggcagcggttgcggtcgctgttg
acgggggagcggcgctcggcgaaggaactgcgcatcgccgcgcaggtgcgccgggtcgcc
tggcgcgaaacgcccggcgaattgggtgcgatgctggcggaggcggcctggattgccgaa
ttgacgcctcagttcaaccgcaagccgaccgaggcgaaggcgcgtggacgggccggcgaa
ctgccctggccgttcaccggcccggtcgtgttcgaggagcagggcgcggtgagcggattc
cacgtgatcgaccgctggcgctacctgggcgcggtgcgatcgatcgcggaagccgccgcg
atcgtggcggcgggcgccgacggcgcctttgtgccggcggtccagcggatcctccagacc
catctggcgcgcggcctgcagctggtgccgctcgcgcccgcggccgcgtga
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