Burkholderia sp. FERM BP-3421: Bsp3421_003454
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Entry
Bsp3421_003454 CDS
T11127
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
burf Burkholderia sp. FERM BP-3421
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burf03032
]
Bsp3421_003454
03036 Chromosome and associated proteins [BR:
burf03036
]
Bsp3421_003454
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_003454
DNA replication proteins [BR:
burf03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
Bsp3421_003454
Chromosome and associated proteins [BR:
burf03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
Bsp3421_003454
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
Bsp3421_003454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
Motif
Other DBs
NCBI-ProteinID:
WDD93377
LinkDB
All DBs
Position
1:239918..240244
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AA seq
108 aa
AA seq
DB search
MTKSELVAQLATRFPQLVLKDADFAVKTMLDAMSDALSKGHRIEIRGFGSFGLNRRPARV
GRNPKSGEKVQVPEKHVPHFKPGKELRERVDGRVGEPLKQDEDTDDDL
NT seq
327 nt
NT seq
+upstream
nt +downstream
nt
atgaccaaatccgagttggtcgcccagctggcaacgcgatttccgcaacttgtcctcaag
gatgcggatttcgcggtgaaaacgatgctcgatgcgatgtccgatgctctatcgaaaggg
catcgcatcgaaattcgcggcttcggcagcttcggcttgaatcgccgcccggcccgcgtg
ggtcgcaacccgaagtcgggtgagaaggtgcaggtgcccgaaaagcacgtgccgcacttc
aagcccggcaaggaattgcgtgagcgcgtcgatggccgcgtcggcgagccgttgaagcaa
gacgaagacaccgacgacgatctgtaa
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