Burkholderia sp. FERM BP-3421: Bsp3421_003946
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Entry
Bsp3421_003946 CDS
T11127
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Bsp3421_003946 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_003946 (mfd)
Enzymes [BR:
burf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bsp3421_003946 (mfd)
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Bsp3421_003946 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
Cas3-like_C_2
SNF2-rel_dom
Glyco_tran_WecG
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WDD93846
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All DBs
Position
1:complement(832649..836215)
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AA seq
1188 aa
AA seq
DB search
MKLKDGFYNRSFALAGPPHDRRPPGPATQPPSMPDNASPQPSPVALVKPGQRFVFDGAHG
SADALAIARYHAAHREQVPLLAVICASAVDAQRLAHELRYFAPDARVRLLPDWETLPYDT
FSPHQDLVSERLATLHDLGEGRCDILLAPATTALYRMAPASFMAAYTFAFAQGERLDEAR
LKAQLTLAGYEHVSQVMRPGEYCVRGSLIDLYPMGSPLPYRIDLFDDQVDSIRAFDPDTQ
RSLYPVRDVRLLPGREFPFDEAARTAFRSRWRETFEGDPSRAPTYKDIGNGVPSAGIEYY
LPLFFEDTATLFHYLPEHAQLVFCGDLDVAIKRFTAETKQRYNFLSHDRERPILEPRRLF
LSDDDFYTLAKPFARVVLTAQPAGGWATPLPPLALDRHADDPLATLRSYLDTTPNRVLFT
VESAGRRETIAQLLAEHHLRAGSTDSFAAWLASDARFALGVAPLANGFAIPGEGYAIITE
TELYGALGRRAGRRRQEQASNVDAMVRDLSELKIGDPVVHAQHGIGRYMGLVSMDLGEGE
TEFLHLEYSGDSKLYVPVAQLHVISRYSGADPDSAPLHALGSGQWERAKRRAAQQIRDTA
AELLNLYARRAAREGHAFALEPRDYVKFAESFGFEETPDQAAAIAAVIGDMTSGKPMDRL
VCGDVGFGKTEVALRAAFIAVMGGKQVALLSPTTLLAEQHTQTFIDRFADWPVRIAELSR
FKSTKEVNAAIAQINEGSVDIVIGTHKLLSSDVQFKRLGLVIIDEEHRFGVRQKEALKAL
RAEVDVLTLTATPIPRTLGMALEGLRDFSVIATAPQKRLAIKTFVRREEDSVIREAMLRE
LKRGGQVYFLHNEVETIENRKSMLEALVPEARIVIAHGQMHERELERVMRDFVAQRANVL
LCTTIIETGIDVPSANTILMHRADKFGLAQLHQLRGRVGRSHHQAYAYLLVHDPQALTKQ
AQRRLEAIQQMEELGSGFYLAMHDLEIRGTGEVLGDKQSGEIHEIGFQLYTEMLNDAVKA
LKNGKEPDLNAPLAATTEINLHAPAILPADYCGDVQERLSLYKRLANCEHGDAIDGIQEE
LIDRFGKLPPPAHALVETHRLRLAAKPLGIVKIDASEAAIGLQFIPNPPIDPMRIIDMVQ
KHRHVKLAGQDRLRIETRTPDLAIRVSTVKETLRALGQPVAQRAAASR
NT seq
3567 nt
NT seq
+upstream
nt +downstream
nt
attaaattgaaggacggattttataataggtctttcgccctggccggcccgccgcacgac
cgccgccccccgggccccgcaacccagccgccttctatgccagacaacgcctctccccag
ccgtctcccgtcgccctcgtcaagccgggccagcgtttcgtgttcgacggcgcgcacggc
tccgccgacgcgctcgcgatcgcccgctaccacgccgcccaccgcgagcaggttccgctg
ctcgcggtgatctgcgcgagcgccgtcgacgcgcagcggctcgcgcacgaattgcgctat
ttcgcgcccgacgcgcgcgtgcggctgctgcccgactgggaaaccctgccctacgacacc
ttctcgccgcaccaggacctggtgtcggagcggctcgcgacgctgcacgacctcggcgag
gggcgctgcgacatcctgctcgcgcccgccaccaccgcgctgtaccggatggcgcccgct
tcgttcatggccgcctacacgttcgcgttcgcgcagggcgagcggctcgacgaggcgcgc
ctgaaggctcagctgacgctggccggctacgagcacgtgagccaggtgatgcgacccggc
gagtattgcgtgcgcggctcgctgatcgacctgtatccgatgggctcgccgctgccgtac
cggatcgacctgttcgacgatcaggtcgactcgatccgcgcgttcgatccggacacccag
cgcagcctgtatccggtccgcgacgtgcggctgctgccggggcgcgagttcccgttcgac
gaggccgcgcgcaccgcgttccgcagccgctggcgcgaaaccttcgagggcgacccgagc
cgcgcgccgacctacaaggacatcggcaacggcgtgccgtcggcgggcatcgaatactac
ctgccgctgttcttcgaggacacggccacgctgttccactacctgccggaacatgcgcag
ctcgtgttctgcggcgatctcgacgtcgcgatcaagcgcttcaccgccgagacgaagcag
cgctacaacttcctgtcgcacgatcgcgagcggccgatcctggagccgcgccggctgttc
ctcagcgacgacgacttctacacgctggccaagccgttcgcgcgcgtggtgctgaccgcc
cagccggcgggcggctgggcgacgccgctgccgccgctcgcgctcgaccgccatgcggac
gatccgctcgcgacgctgcgcagctacctcgacacgacgccgaaccgcgtgctgttcacc
gtcgagtcggccggccgtcgcgagaccatcgcgcaactgctcgccgagcatcatctgcgc
gcgggctcgaccgacagcttcgccgcgtggctcgcgagcgacgcgcgcttcgcgctcggc
gtcgccccgctcgcgaacggcttcgcgattcccggcgaaggctacgcgatcatcaccgag
accgagctgtacggcgcgctcggccggcgcgccggacggcggcgccaggaacaggcgagc
aacgtcgacgcgatggtgcgcgacctgtccgaactcaagatcggcgatccggtcgtgcac
gcgcagcacggcatcggccgctacatggggctcgtgtcgatggatctcggcgaaggcgag
accgagttcctgcacctcgaatactcgggcgacagcaagctctacgtccccgtcgcgcaa
ttgcacgtgatctcgcgctacagcggcgcggatcccgacagcgcgccgctgcacgcgctc
ggctccggccagtgggagcgcgccaagcgccgtgccgcccagcagatccgcgacaccgcg
gccgagctgctgaacctgtacgcgcggcgcgcggcgcgcgagggccacgcgttcgcgctc
gagccgcgcgactacgtgaagttcgcggaaagcttcggtttcgaggaaacgcccgatcag
gccgccgcgatcgccgcggtgatcggcgacatgacgagcggcaagccgatggaccggctc
gtgtgcggcgacgtcggcttcggcaagaccgaggtcgcgctgcgcgcggccttcatcgcg
gtgatgggcggcaagcaggtcgcgctgctgtcgccgaccaccctgctcgccgagcagcac
acgcagaccttcatcgaccgcttcgcggactggcccgtgcggatcgccgagctgtcgcgc
ttcaagtccaccaaggaagtgaacgcggcgatcgcgcagatcaacgagggcagcgtcgac
atcgtgatcggcacgcacaagctgctgtcgtccgacgtgcagttcaagcggctcggcctc
gtgatcatcgacgaggaacaccgtttcggcgtgcgccagaaggaagcgctcaaggcgctg
cgcgcggaggtcgacgtgctcacgctgaccgcgacgccgatcccgcgcacgctcgggatg
gcgctcgagggcctgcgcgacttctcggtgatcgccaccgcgccgcagaagcggctcgcg
atcaagaccttcgtgcgccgcgaggaggacagcgtgatccgcgaggcgatgctgcgcgag
ctgaagcgcggcggccaggtgtacttcctgcacaacgaggtcgagacgatcgagaaccgc
aagtcgatgctcgaggcgctggtgcccgaggcgcgcatcgtgatcgcgcacggccagatg
cacgagcgcgagctggagcgcgtgatgcgcgacttcgtcgcgcagcgcgccaacgtgctg
ctgtgcaccaccatcatcgagaccggcatcgacgtgccgagcgccaacaccatcctgatg
caccgcgcggacaagttcggcctcgcgcagctgcaccagttgcgcggccgggtcggccgc
tcgcaccaccaggcctacgcgtacctgctggtgcacgatccgcaggcgctgaccaagcag
gcgcagcgccggctcgaagcgatccagcagatggaggagctgggctccggcttctatctc
gcgatgcacgacctcgagatccgcggcacgggcgaggtgctcggcgacaaacagtcgggc
gagatccacgagatcggcttccagctgtacacggagatgctcaacgacgcggtgaaggcg
ctcaagaacggcaaggagcccgacctcaacgcgccgctcgccgcgaccaccgagatcaac
ctgcacgcgcccgcgatcctgcccgccgactattgcggcgacgtgcaggaacgcctgtcg
ctgtacaagcggctcgcgaactgcgagcacggcgatgcgatcgacggcatccaggaggaa
ctgatcgaccgcttcggcaagctgccgccgcccgcgcacgcgctcgtcgagacacaccgc
ctgcggctcgccgcgaagccgctcgggatcgtcaagatcgatgcgagcgaggccgcgatc
gggctgcagttcatcccgaatccgccgatcgacccgatgcgcatcatcgacatggtccag
aagcaccgccacgtgaagctcgccggccaggaccggctgcgcatcgagacgcgcacgccc
gacctcgcgatccgcgtgtcgaccgtcaaggaaacgctgcgcgcgctcggccagccggtc
gcgcagcgcgcggcggcgagccgctag
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integrated database retrieval system
