Burkholderia sp. FERM BP-3421: Bsp3421_004444
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Entry
Bsp3421_004444 CDS
T11127
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsp3421_004444 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burf03019
]
Bsp3421_004444 (rnr)
03016 Transfer RNA biogenesis [BR:
burf03016
]
Bsp3421_004444 (rnr)
Enzymes [BR:
burf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Bsp3421_004444 (rnr)
Messenger RNA biogenesis [BR:
burf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Bsp3421_004444 (rnr)
Transfer RNA biogenesis [BR:
burf03016
]
Prokaryotic type
tRNA degradation factors
Bsp3421_004444 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_Dis3
OB_RNR_1st
RNase_II_C_S1
CSD
RcsD_ABL
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
WDD94325
LinkDB
All DBs
Position
1:complement(1392815..1395262)
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AA seq
815 aa
AA seq
DB search
MSKYPYPIPSREEILGALRTSDVPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRISHDILVTQNAKKAKVGQVV
VVELTDFPSRHSQPIGRVTEVLGDIDDPGMEIEIAVRKYGVPHEFSAAALGEAASLPDKV
RPIDLRYRVDLRDVPLVTIDGEDARDFDDAVYCEPVAVGRGDGFRLIVAIADVSHYVQPA
SGLDGDAVERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLVCDIVVTARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLGNTKGPEAARRAALLPHLQNLYGVYKALLAARQKRGAID
FDTTETYIVCNAQGKIEQIVPRQRNDAHRLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTAEKLENLRTFLRGMGLTLGGGETPHASDYAALMARIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYAILAGKKYTPKAPDGVELNTALSPR
ARAMQQADDESRGRARSNTAIWEELGLHCSSNERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKTGRTAPPPASEAGGPRVRALPPVDEPARRKKAPSAP
TAAVKDARTARGAARKKGAPAAKSAAKKVRPRSKH
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaagtatccgtatcccatccctagccgtgaagagattctcggcgcgctgcggacc
agcgacgttccgctcgccgcgaacgacatcgccgaagcgctgtcgatcaagcgccaggag
cgcgaagggtttttccggcgggtcgccgcgatggagcgcgacggccagatccggctcgac
aagcgtggtcattaccagctcacccatccgtccaacttcgtcgcgggccgcgtacagggc
catcgcgacggttatggcttcgtgattcgcgacgacggccaggacgatctgttcctgccg
aacggcgagatgcagaaggtcatgcacaacgatcgcgtgttggcgcggatcgtcggctac
gaccggcgcggccgtcccgaaggtcatgtggtcgaggtgaccgagcgcgcgaacaagcgc
gtgatcggccggctgttgaacgagaacggcgcgctgatcgtggcgcccgaggacaagcgc
atcagccacgacatcctggtcacgcagaacgcgaagaaggccaaggtcggacaggtggtg
gtggtcgagctgaccgatttcccgagccgtcattcgcagccgatcgggcgcgtgaccgag
gtgctcggcgatatcgacgatcccggcatggagatcgagatcgcggtgcgcaagtacggc
gtgccgcacgagttcagcgcggccgcgctcggcgaggccgcgtcgctgccggacaaggtg
cggccgatcgacctgcgctaccgggtggacctgcgcgacgtgccgctcgtcacgatcgac
ggcgaggacgcgcgcgacttcgacgatgcggtgtactgcgagccggtcgcggtcggtcgc
ggcgacggcttccgcctgatcgtcgcgatcgcggacgtgtcgcactacgtgcagccggcc
agcggcctcgacggcgacgcggtcgagcgcagcacgtcggtgtatttcccgcgccgggtg
atcccgatgctgccggagaagctgtcgaacggcctgtgttcgctgaacccgcaggtggac
cgctgcgtgctcgtgtgcgacatcgtggtgaccgcgcgcggcgagatcaaggcgtaccag
ttctaccccgcggtgatccattcggccgcgcgcctgacctataccgaagtggccgcggtg
ctcggcaacaccaaggggccggaggcggcgcgccgcgccgcgctcctgccgcacctgcag
aacctctacggcgtctacaaggcgctgctcgccgcgcgccagaagcgcggggcgatcgac
ttcgacaccaccgagacctacatcgtctgcaacgcgcagggcaagatcgagcagatcgtg
ccgcgccagcgcaacgatgcgcaccgcctgatcgaggaatgcatgctggccgcgaacgtg
tgcgcggccgacttcctcaagcgcaacaagcatccgggcctgtatcgcgtgcacgcgggg
ccgaccgccgagaagctcgagaacctgcgcacgttcctgcgcgggatggggctcacgctc
ggcggcggcgagacgccgcacgcgagcgactatgccgcgctgatggcgcgcatccgcgat
cggcccgatgcgcagatgctgcagccgatgctgctgcgctcgatgcagcaggcggtgtac
agccccgacaacatcggccacttcgggctcgcctacgaggcctacgcgcacttcacgagc
ccgatccgccgctatccggacctgctcacgcaccgcgcgatctacgcgatcctggccggc
aagaagtacacgccgaaggcgccggacggcgtcgagctgaacaccgcgctgtcgccgcgc
gcccgcgcgatgcagcaggccgacgacgagtcgcgcggccgggcgcgttcgaacaccgcg
atctgggaagagctgggcctgcactgctcgtcgaacgagcgccgcgcggacgaggcgtcg
cgcgacgtcgaggcctggctcaagtgctatttcatgcgcgacaagctcggcgaggagtac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgagggtctcgtgcacgtgacggagctcggttccgattatttccagtacgacgagatc
aagaacgaactgcgcggcgagcgcaccgggatccgctaccgcctgtcggaccgggtgcgg
gtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgacttccggctcgtgcgcgat
acgccggtgaagaccgggcgcaccgcgccgccgcccgcgagcgaagccggcggcccgcgc
gtgcgcgcgctgccgcctgtcgacgagccggcgcgccgcaagaaggccccgagcgcgccg
acggccgccgtgaaggacgcgcgcacagcgcgcggcgcggcgcgcaagaagggcgcaccc
gccgcgaagtcggcggccaagaaggtgcgtccgcgcagcaagcattga
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