Burkholderia sp. FERM BP-3421: Bsp3421_004939
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Entry
Bsp3421_004939 CDS
T11127
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03030
DNA replication
burf03430
Mismatch repair
burf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Bsp3421_004939 (dnaE)
03430 Mismatch repair
Bsp3421_004939 (dnaE)
03440 Homologous recombination
Bsp3421_004939 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burf03032
]
Bsp3421_004939 (dnaE)
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_004939 (dnaE)
Enzymes [BR:
burf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Bsp3421_004939 (dnaE)
DNA replication proteins [BR:
burf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
Bsp3421_004939 (dnaE)
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
Bsp3421_004939 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
WDD94795
LinkDB
All DBs
Position
1:complement(1948741..1952271)
Genome browser
AA seq
1176 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYTEARGK
GIKPIAGCDVWIANPDDRDKPARLLLLVKDKRGYLNLCELLSKAWLTNQHRGRAELDAAW
LDGELSQGLLALSGAQQGDIGLALAAGNEEAARRHAARWSKVFPGGFYVELQRYGQPGAE
AYIQQAATIAAELKLPVVATHPLQFMSDDDFTAHEARVCISEGDMLANPRRQKRFTTAQR
FMSQDEMLALFADLPSAIANSVEIAKRCNLTLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLEKRLAQLYPDAAERDRQRDTYYQRLDFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPLLQERYDNEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDEGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPTSFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAATNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCAVNNLAVLPPDINQSHYRFEPVAEADGRRSRTIRYGLGAVK
GSGQNAIEEILRAREEKRFTDLFDFCDRIDRRIVNRRTVEALIRAGAFDSLHENRARLLA
SVPLAMEAAEQAAANALQAGLFDIGGESTHEHELVDEPAWDDKRRLQEEKGALGFYLSGH
LFDSYRDEVRRFARQKLGELKEGRDRLVAGVIASLRTQMTQRGKMLIALLDDGTGQCEIT
IFNEQFDANRTLFKEDELLIVQGQARNDAFTGGIRFTADAVMDLERARSRYAQAVRLTVN
GNADADALRRVLDAHAAKADAAPPVEAPAPRGGRDRDGGRRAAPPLPNGLQVRIAYRNAR
AQGEMQLGEAWRVKPSDTLLAELRAAFAGSIVEIAY
NT seq
3531 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatccccgcttcgtccatctccgcgttcactccgaattctcgattgccgacggc
atcgtgcgcattgacgacatcgtcaaggcagccgccgcggacggccagggcgcgctcgcg
ctcaccgacctcggcaacgcattcggcctcgtccgtttctacacggaagcccgtggcaag
ggcatcaagccgatcgccggctgcgatgtctggatcgccaatcccgatgatcgggacaag
cccgcgcgcctcttgctgctcgtcaaggacaagcgcggctacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagcaccgcggccgcgcggagctcgacgcggcctgg
ctcgacggcgagctgtcgcagggcctgctcgcgctgtcgggcgcccagcagggcgacatc
ggcctcgcgctcgcggcgggcaacgaggaggcggcccgccgtcacgcggcgcgctggtcg
aaggtgttcccgggcggcttctacgtcgaactgcagcgctacgggcagccgggcgccgag
gcctacatccagcaggccgcgacgatcgccgccgagctgaagctgccggtggtcgccacc
catccgctgcagttcatgtccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatgctcgcgaatccgcgccgccagaagcgcttcaccaccgcgcagcga
ttcatgtcgcaggacgaaatgctcgcgctgttcgccgacctgccgtcggcgatcgcgaac
tcggtcgagatcgcgaagcgctgcaacctgacgctcgagctcggcaagccgaagctgccg
ctgttcccgacgcccgacggcatgtcgctcgacgactacctcgtgcagctgtcgaaggag
ggcctggaaaagcgcctcgcgcagctgtacccggacgcggcggaacgcgaccgccagcgc
gacacctactaccagcgcctcgacttcgagtgcggcacgatcacgaagatgggctttccg
ggctacttcctgatcgtcgcggacttcatcaactgggccaagaacaacggcgtgccggtc
gggccggggcggggctcgggcgcgggttcgctggtcgcctacgcgctcggcatcaccgac
ctcgacccgctgcgctacaacttgctgttcgagcgcttcctgaatccggagcgggtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggagaagtacggcgcggacgcggtgtcgcagatcgcgaccttcggcacgatggccgcg
aaggcggcggtgcgcgacatcgggcgcgtgctcgatctcggctacatgttcaccgacggc
gtcgcgaagctgatcccgttcaagccgggcaagcacgtgacgatcgcggacgcgatgaag
gaggagccgctgctccaggagcgctacgacaacgaggacgaggtgcaccagctgctcgac
ctcgcgcagcgcgtcgaggggctgacccgcaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgacttctgcccgctgtacacgcagggcgacgaaggcggc
gtggtgagccagtacgacaaggacgacgtcgaggcggtcggcctcgtgaagttcgacttt
ctgggcctgaccacgctgaccatcctcgactgggccgagcgctacatccgccggctcgac
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatccgacctcgttccag
atcctcaagaaggccaacacggtcgccgtgttccagctggaaagccgcggcatgcagggc
atgttgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtccttgtac
cgcccgggcccgatggacctgatcccgagcttctgcgcgcgcaagcacggccgcgagaag
gtggattatccggatccgcgcgtcgagcccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctactcgctcggcggcgcc
gacttgctgcgccgcgcgatgggcaagaagaagcccgaggagatggccaagcaccgcgag
atcttcgcggagggcgcggcgaccaacggcctcacgcgcgagaagtccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcctacgcg
ctgctcgcgtactacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgattgcgcc
gtgaacaacctcgccgtgctgccgcccgacatcaaccagtcgcactatcgcttcgagccg
gtcgccgaggccgacggcaggcgttcgcgcaccatccgctacggcctgggcgcggtgaag
ggcagtggccagaacgcgatcgaggagatcctgcgcgcccgcgaggaaaagcgcttcacc
gacctgttcgacttctgcgatcggatcgaccggcgcatcgtgaaccgccgcacggtcgag
gcgctgatccgcgcgggcgcgttcgattcgctgcacgagaatcgcgcgcggctgctcgcg
tcggtgccgctcgcgatggaagccgccgagcaggcggccgcgaacgcgctgcaggcgggc
ctgttcgacatcggcggggaatcgacgcacgagcacgagctggtcgacgaaccggcctgg
gacgacaagcgccggctgcaggaggagaagggcgcgctcggcttctacctgtcggggcac
ctgttcgattcctaccgcgacgaggtgcgccgtttcgcgcgccagaagctcggcgagctg
aaggaaggccgcgaccggctggtggccggcgtgatcgcgtcgctgcgcacccagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggcaccggccagtgcgagatcacg
atcttcaacgagcagttcgacgcgaaccgcacgctgttcaaggaagatgaactgctgatc
gtgcagggccaggcgcgcaacgacgcgttcacgggcggcatccgcttcaccgcggatgcg
gtgatggacctcgagcgcgcgcgcagccgctacgcgcaggccgtgcgcctgacggtcaac
ggcaatgccgacgcggacgcgctgcgccgcgtgctcgacgcgcacgcggcgaaggccgac
gctgcgccgcccgtcgaggcgcccgcgccgcgcggcggacgcgaccgcgacggcggccgt
cgcgcggcgccgccgctgccgaacggcctccaggtgcggatcgcgtaccgcaacgcgcgc
gcgcagggcgagatgcagctcggcgaggcgtggcgcgtgaagccgagcgacacgctgctc
gcggaattgcgcgcggcgttcgccggcagcatcgtcgaaatcgcctactga
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