Burkholderia sp. FERM BP-3421: Bsp3421_004942
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Entry
Bsp3421_004942 CDS
T11127
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsp3421_004942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burf03019
]
Bsp3421_004942
Enzymes [BR:
burf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bsp3421_004942
Messenger RNA biogenesis [BR:
burf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bsp3421_004942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
WDD94798
LinkDB
All DBs
Position
1:complement(1954388..1955866)
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AA seq
492 aa
AA seq
DB search
MSDSVAKPVDATFDQFGLAADILKAIVEQGYTTPTPIQAKAIPVVLSGRDVMGAAQTGTG
KTASFSLPILQRLLPQANTSASPARHPVRALILTPTRELADQVAANVHAYGKHTPLRSAV
VFGGVDMNPQMAELRRGVEILIATPGRLLDHVQQKTANLGQVQILVLDEADRMLDMGFLP
DLQRILNLLPKERQTLLFSATFSPEIKKLASTYLRDPQTIEVARSNATATNVTQIVYDVA
EGDKQAAVVKLIRERALKQVIVFCNSKIGASRLSRLLERDGVVATAIHGDRSQSERMQAL
DAFKRGEIEALVATDVAARGLDIAELPAVINFDLPFNAEDYVHRIGRTGRAGASGDALSL
CSPNERKQLADIEKLIKRTLPLETLAIEAPARHRRDERSERGERGERSERGGRRERDEHR
GPGVRRAGGERPYHARREAPVDEFFLKPYEPSQAASRPADEPDASQPEKKASKQPLAALL
GGFGMPRKTSSS
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgtccgattctgttgccaagcctgtcgacgcgactttcgaccagttcggtcttgccgcc
gatatcctgaaagccatcgtggagcagggctatacgacgccgacgccgatccaggccaag
gcgattccggtcgtgctgtccggccgcgacgtgatgggcgccgcgcaaaccggcaccggc
aagaccgcgagcttctcgctgccgatcctccagcggctgttgccgcaggccaacaccagc
gcatcgcccgcgcgccacccggtgcgcgcgctgatcctcacgccgacccgcgagctggcc
gatcaggtcgccgcgaacgtgcatgcctacggcaagcacacgccgctgcgcagcgcggtg
gtgttcggcggtgtcgacatgaacccgcagatggccgagctgcggcgcggcgtcgagatc
ctgatcgcgaccccggggcggctgctcgaccacgtgcagcagaaaaccgcgaatctcggc
caggtccagatcctcgtgctcgacgaagccgaccgcatgctcgacatgggcttcctgccc
gacctgcagcggatcctgaacctgctgccgaaggaacgccagacgctgctgttctcggcg
accttctcgcccgaaatcaagaagctcgcgtcgacctacctgcgcgatccgcagacgatc
gaagtcgcgcgcagcaatgcgacggcgaccaatgtcacgcagatcgtctacgacgtcgcc
gagggcgacaagcaggcggccgtggtcaagctgatccgcgagcgcgcgctcaagcaggtg
atcgtgttctgcaacagcaagatcggcgcgagccgcctgtcgcgcctgctcgagcgcgac
ggcgtggtggccaccgcgatccacggcgaccgttcgcagagcgagcggatgcaggcgctc
gacgcgttcaagcgcggcgagatcgaggcgctcgtcgcgaccgacgtcgccgcgcgcggc
ctcgacatcgccgagctgccggccgtgatcaacttcgacctgccgttcaacgcggaagac
tacgtgcaccggatcggccgtaccggccgcgcgggcgcgtcgggcgacgcgctgtcgctg
tgcagtcccaacgaacgcaagcagctcgcggacatcgagaagctgatcaagcgcacgctg
ccgctcgaaacgctcgcgatcgaggcgcccgcgcggcatcgccgcgacgagcggagcgag
cgtggtgagcgtggggagcggagcgaacgcggcggccgccgcgagcgcgacgagcatcgc
ggcccgggcgtgcgccgcgccggcggcgagcgcccgtaccacgcgcgccgcgaggcgccc
gtcgacgaattcttcctgaagccgtacgagccgtcgcaggcggccagccgtccggcggac
gagccggacgcatcgcagcccgagaagaaggcctcgaagcagcccctcgcggcgctgctc
ggcggcttcggcatgccgcgcaagacctcgtcgtcctga
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