Burkholderia sp. FERM BP-3421: Bsp3421_005388
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Entry
Bsp3421_005388 CDS
T11127
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsp3421_005388
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burf03019
]
Bsp3421_005388
Enzymes [BR:
burf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Bsp3421_005388
Messenger RNA biogenesis [BR:
burf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bsp3421_005388
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
CMS1
P-loop_SecA
Cas3-like_C_2
CARD_2
Ric8
Sacchrp_dh_NADP
AAA_22
Motif
Other DBs
NCBI-ProteinID:
WDD95223
LinkDB
All DBs
Position
1:2423892..2425331
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AA seq
479 aa
AA seq
DB search
MSFASLGLAEPLVRAVNELGYTEPTPIQTQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYASHPGAKRTVRALILTPTRELAAQVEESVRAYSKYVKLRSAVMFGGVSINPQI
DALRRGVDIVVATPGRLLDHMQQKTIDLSQLDILVLDEADRMLDMGFIHDIKRVLAKLPP
KRQNLLFSATFSDEIKALADSLLDNPALIEVARRNTTAEKIAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLAKDGISALAIHGNKSQSARTRALSEFKSNTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGANGEAVSLVCVDEKQLLRD
IERLIKREIPQEVISGFEPDPNAKPEPIQRRGQGQGQGQGQRGGNAGGGQRSPRAGGPAP
AQAAPRRSEGGQAKQAKQPAKPRAPQGGGGNGGRPAAGTGGGGAHANRSRSSRSGQRGH
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgcttccctcggcctcgccgaaccgctggtgcgggccgtcaacgaactcggt
tataccgagccgaccccgatccaaacccaggccatccccgccgtactcggcggcggcgac
ctgctcgccggcgcgcagaccggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgcctgcacaccttctatgcgtcccatccgggcgcgaagcgcacggtgcgcgcgctg
attctcacgccgacgcgcgaactcgccgcccaggtcgaggaaagcgtgcgcgcgtacagc
aagtacgtgaaactgcgctcggccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctccggcgcggcgtcgacatcgtcgtcgcgacgcccggccgcctgctcgaccac
atgcagcagaagaccatcgatctctcgcagctcgacatcctggtgctcgacgaggccgac
cggatgctcgacatgggcttcatccacgacatcaagcgcgtgctcgcgaagctgccgccg
aagcgccagaacctgctgttctccgcaaccttctccgatgagatcaaggcgctcgccgac
agcctgctcgacaaccccgcgctgatcgaggtcgctcgccgcaacaccaccgccgaaaag
atcgcgcagaagatccacccggtcgaccgcgaccgcaagcgcgagctgctgacccacctg
atccgcgaacacaactggttccaggtgctcgtgttcacccgcaccaagcacggcgcgaac
cggctcgcggaacagctggcgaaggacggcatcagcgcgctcgcgatccacggcaacaag
agccagtcggcgcgcacgcgcgcgctgtcggaattcaagagcaatacgctgcaggtgctg
gtcgcgaccgacatcgccgcgcgcggaatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggactacgtgcaccggatcggccgcaccggccgcgcg
ggcgcgaacggcgaggcggtgtcgctcgtctgcgtcgacgagaagcaattgctgcgcgac
atcgagcggctcatcaagcgcgagattccgcaggaagtgatctcgggcttcgagcccgat
ccgaacgcgaagccggagccgatccagcgtcgcggccagggtcaaggtcaaggtcagggt
cagcgcggcggcaacgccggcggcggccaacgttcgccgcgcgcgggtgggcccgcgccg
gcgcaggccgcgccgcgccgcagcgaaggcggtcaggcgaagcaggccaaacagcccgcc
aagccgcgcgcgccgcaaggcggcggcggcaacggcggccgaccggcggccggcacgggc
ggcggcggcgcgcacgcgaaccgcagccgttcgtcgcgcagcggccaacgcggccactga
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