Burkholderia sp. FERM BP-3421: Bsp3421_005940
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Entry
Bsp3421_005940 CDS
T11127
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
burf Burkholderia sp. FERM BP-3421
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burf03032
]
Bsp3421_005940 (gyrB)
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_005940 (gyrB)
Enzymes [BR:
burf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
Bsp3421_005940 (gyrB)
DNA replication proteins [BR:
burf03032
]
Prokaryotic type
DNA Topoisomerases
Bsp3421_005940 (gyrB)
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
Bsp3421_005940 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
GyrB_insert
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
WDD95760
LinkDB
All DBs
Position
1:3019198..3021672
Genome browser
AA seq
824 aa
AA seq
DB search
MTEQHNQQPDNSGYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNAIDEA
LAGYCNDIHVTIHADNSISVTDNGRGIPTDVKMNDKHEPKRSAAEIVMTELHAGGKFDQN
SYKVSGGLHGVGVSCVNALSSWLRLTVRRNGKKHFMEFHRGVAQNRVLEMQDGEQVSPMQ
LVGPTENRGTEVHFMADQTIFGTVEFHYDILAKRIRELSFLNNGVRIRLTDQRSGKEDDF
AFAGGVKGFVEYINKTKQVLHPTIFHIIGEKEGVGVEVAMQWNDSYNENVLCFTNNIPQR
DGGTHLTGLRAAMTRVINKYIVDNEIAKKAKVETSGDDMREGLSCVLSVKVPEPKFSSQT
KDKLVSSEVRAPVEEVVAKALEEFLLETPNDAKIICGKIVEAARARDAARKAREMTRRKG
VLDGVGLPGKLADCQEKDPAKSEIYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKA
RYDKLLSSEQIVTLVTALGCGIGKDDYNLEKLRYHRIIIMTDADVDGAHIRTLLLTFFYR
QMPDMIERGYVYIAQPPLYKVKAGKDERYLKDESELNAHVLRLALQGSELVPSENATAIS
GDALGELARSYLLAQGVVSRLSRLYDPAALEAIMDGVAIDLSDEASTEVSAKALFGALHD
EALKNEVRVVPAYDTVREQRSLHVERAHHGNVRVSVIDEEFQHTADYQQLVNTANTFKGL
IGVGATIKRGERSTPVSDFKSAMKWLLADAERNLSKQRYKGLGEMNPSQLWETTMDPAVR
RLLRVQIEDAIAADGIFTTLMGDEVEPRRAFIESNALRAGNIDV
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgactgaacagcacaatcaacagcccgacaacagcggctacggcgcctcctccatccag
atcctcgaaggtctggaagccgtgcgcaagcggcccgggatgtacatcggcgatacgtcg
gacggaaccggtctgcaccacctcgtgttcgaagtgctcgacaacgcgatcgacgaggcg
ctggccggttattgcaacgacatccacgtgacgattcacgccgacaactcgatttccgtg
accgacaacggccgcgggattccgaccgacgtgaagatgaacgacaagcacgagccgaag
cgcagcgccgccgagatcgtgatgaccgagctgcacgcgggcgggaagttcgaccagaac
agctacaaggtgtcgggcgggctgcatggcgtcggcgtgtcgtgcgtgaacgcgctgtcg
agctggttgcggctgaccgtgcggcgcaacggcaagaaacacttcatggagtttcatcgc
ggcgtcgcgcagaaccgcgtgctcgagatgcaggacggcgagcaggtgtcgccgatgcag
ctcgtcgggccgacggagaatcgcgggactgaagtgcatttcatggccgatcagacgatc
ttcggcacggtcgagtttcactacgacattctggcgaagcggattcgcgagctgtcgttc
ttgaataacggcgtgcggattcggttgaccgaccagcgctcgggcaaggaagacgatttc
gcgttcgccggcggcgtgaagggttttgtcgagtacatcaacaagaccaagcaggtgctg
cacccgaccattttccacatcatcggcgagaaggaaggcgtgggcgtcgaggtcgcgatg
cagtggaacgacagctacaacgagaatgtgctgtgtttcaccaacaacattccgcagcgc
gacggcgggacgcacttgaccgggctgcgcgcggcgatgacgcgcgtgatcaacaagtac
atcgtcgacaatgaaatcgccaagaaggcgaaggtcgagacgagcggcgacgacatgcgc
gaagggctgtcgtgcgtgctgtcggtgaaggtgcccgagccgaagttcagctcgcagacc
aaggacaagctggtgtcgtcggaagtgcgcgcgccggtcgaggaagtggttgcgaaggcg
ctcgaggaattcctgctggaaacgccgaacgacgcgaagatcatttgcgggaagatcgtt
gaagcggcgagggcgcgggatgccgcgcggaaggcgcgcgagatgacgcggcgcaagggc
gtgctcgatggggttgggttgcccgggaagctggcggattgccaggagaaggatccggcg
aagtcggaaatctatatcgtcgagggcgactcggcaggtgggtcggccaagcaagggcgt
gatcggaagttccaggcgattctgccgctgcgcgggaaggtgctcaacgtcgagaaggcg
cggtatgacaagctgctgtcgtccgagcagatcgtcacgctcgtgaccgcgctcgggtgc
gggatcgggaaggatgattacaacctcgagaagctccggtatcaccgcatcatcatcatg
accgacgcggacgtcgacggtgcgcatatccggacgctgctgctcacgttcttctatcgg
cagatgcccgatatgatcgagcgcgggtatgtgtatatcgcgcagccgccgctttataag
gttaaagcggggaaggacgagcggtatctcaaggatgagtcggagttgaatgctcacgtg
ctgcggttggcgctgcaagggtcggagctggtgcccagcgagaacgccacggcgatttca
ggggatgcgcttggggagctggctcggtcgtatctgctcgcgcagggtgtggtcagccgg
ttgagccgcttgtatgacccggcagcgttggaagcgatcatggatggcgtggcgatcgat
ctttcggatgaggcttcgacggaggtgtcggcgaaggcgttgttcggcgcactgcatgat
gaagcgctcaagaatgaagtgcgggtcgtgccggcttatgacacggtgcgtgagcagcgg
tcgctgcacgtcgagcgcgcgcatcacgggaatgtgcgggtttccgtcatcgatgaagag
ttccagcataccgccgattatcagcagctcgtgaatacggcgaatacgttcaaggggctg
attggcgttggcgcgacgatcaagcgcggggagcgcagcacgccggtgtccgatttcaag
agcgcgatgaagtggctgctcgccgatgccgagcggaatctgtcgaagcaacggtataag
gggctgggggagatgaacccctcccagctgtgggaaacgacgatggatccggccgtgcgg
cgtttgttgcgcgtgcagatcgaagatgcgattgctgcggatgggatcttcaccaccctg
atgggggatgaggtcgagccgcggagagcgtttatcgagagcaatgcgctgcgggcgggg
aatattgatgtttga
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