Burkholderia sp. FERM BP-3421: Bsp3421_006237
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Entry
Bsp3421_006237 CDS
T11127
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Bsp3421_006237 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
burf03021
]
Bsp3421_006237 (rpoC)
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_006237 (rpoC)
Enzymes [BR:
burf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Bsp3421_006237 (rpoC)
Transcription machinery [BR:
burf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Bsp3421_006237 (rpoC)
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Bsp3421_006237 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Baculo_ME53
Motif
Other DBs
NCBI-ProteinID:
WDD96044
LinkDB
All DBs
Position
1:3339853..3344097
Genome browser
AA seq
1414 aa
AA seq
DB search
MKALLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDMTLRDIERVLYFEAYVVIEPGMTPLKARQIMTEEDYYNKVEEYGDEFRAEM
GAEGVRELLRAINIDEQVETLRTELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILE
VLPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINAKGEGLTFTGVSEVLRAYENK
EVELASRVNVRITEMVHNEDTSEGAPQFVPKISLYATTVGRAILSEILPHGLPFSVLNKP
LKKKEISRLINTAFRKCGLRATVVFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG
DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLSTEPVTDRDGKETR
QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS
THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL
RDRILGRVAVADVVNPETQETLFESGTLLDEDAVEDIERLGIDEVRVRTALTCETRYGLC
AACYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN
GTVRFTATMRYVTNAKGEQIVISRSGEAMITDEFGRERERHKVPYGATLLQLDGALIKAG
TQLATWDPLTRPIITEYGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQAAKS
VRPQVKLLDANGDEVKIPGTEHAVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD
ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVITDLEGNQHEFLIAKEK
QVLVHDAQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKINDKHIE
VIVRQMLRRVQITDNGDTRFIPGEQVERSDMLDENDRMIAEDKRPATYENILLGITKASL
STDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKARKNKET
ADRERFDQIAAEEAFDFGTPETPAAAIEPQHPAE
NT seq
4245 nt
NT seq
+upstream
nt +downstream
nt
atgaaagctctgctcgatctattcaagcaagtccaacaagaagaagttttcgacgcgatc
aagatcggtctggcttcgccggacaagatccgctcctggtcgttcggtgaggtgaagaag
ccggagaccatcaactaccgcaccttcaagccggagcgggatggtctgttctgcgcgaag
atcttcgggccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggcgtgatctgcgagaagtgcggcgtcgaagtcacgctcgcgaaggtccgccgcgag
cggatgggccacatcgaactggcttcgcccgtcgcgcacatctggttcctgaagtcgctg
ccgtcgcgtctgggcatggtgctcgacatgacgctgcgcgacatcgagcgcgtgctgtac
ttcgaagcgtacgtggtgatcgaaccgggcatgacgccgctgaaggcgcggcagatcatg
accgaagaggattactacaacaaggtcgaggaatacggcgacgaattccgcgccgagatg
ggcgcggaaggcgtgcgcgagctgctgcgtgcgatcaacatcgacgagcaggtcgagacg
ctgcgcaccgagctgaagaacaccggctcggaagcgaagatcaagaagtacgcgaagcgc
ctgaaggtcctcgaggcattccagcgttcgggcatcaagcccgagtggatgattctcgaa
gtgctgccggtgctgccgccggaactgcgtccgctcgtgccgctcgacggcggccgtttc
gcgacctcggacctgaacgacctgtatcgccgcgtgatcaaccggaacaaccggttgaag
cgtctgctcgagctgaaggcgcccgagatcatcgtccgcaacgaaaagcggatgctgcag
gaagccgtcgactcgctgctcgacaacggtcgccgcggcaaggcgatgacgggcgcgaac
aagcgtccgctgaagtcgctcgccgacatgatcaagggtaagggcggtcgtttccgtcag
aacctgctgggcaagcgcgtcgactactcgggccgttcggtgatcgtggtcggcccgacg
ctcaagctgcaccagtgcggcctgccgaagctgatggcgctcgaactgttcaagccgttc
atcttcaacaagctggaagtgatgggcgtcgcgacgaccatcaaggcggcgaagaaggaa
gtcgagaaccagacgccggtggtgtgggacatcctcgaagaggtgatccgcgagcatccg
gtgatgctgaaccgcgcgccgacgctgcaccgtctcggtatccaggcgttcgagccggtg
ctgatcgaaggcaaggcaatccagctgcacccgctcgtttgcgcggcgttcaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgtcgctcgaagcgcagatggaagcg
cgcacgctgatgctcgcgtcgaacaacgtgctgttcccggccaacggcgatccgtcgatc
gtgccgtcgcaggatatcgtgctgggtctgtactacgcgacccgcgaggcgatcaatgcg
aagggcgagggcctgacgttcaccggcgtgtcggaagtgctccgcgcgtacgagaacaag
gaagtcgagctggcctcgcgcgtcaacgtgcggatcaccgaaatggtccacaacgaagac
acgtcggaaggcgcgccgcagttcgtgccgaagatctcgctgtacgcgacgaccgtcggc
cgcgcgatcctgtcggagatcctgccgcacggcctgccgttctcggtgctgaacaagccg
ctgaagaagaaggaaatctcgcgcctgatcaacaccgcgttccgcaagtgcggtctgcgc
gcgacggtggtgttcgccgaccagctgatgcagtcgggcttccgtctcgcgacgcgcgcc
ggcatctcgatctgcgtggacgacatgctcgtgccgccgcagaaggagacgatcgtcggt
gacgccgcgaagaaggtgaaggagtacgaccgccagtacatgtcgggtctcgtcaccgcg
caagagcgctacaacaacgtggtcgacatctggtcggcgacgtcggaagcggtcggcaag
gcgatgatggagcagctgtcgacggagccggtgacggatcgcgacggcaaggaaacgcgc
caggaatcgttcaactcgatctacatgatggccgactcgggcgcccggggttccgcggtg
cagattcgtcagctggccgggatgcgcggcctgatggcgaagccggacggctccattatc
gagacgccgattaccgcgaacttccgcgaaggcctgaacgtgttgcagtacttcatctcg
acccacggtgcacgtaagggtctggctgatacggcactgaagaccgcgaactcgggttac
ctgacgcgtcgtctcgtcgacgtgacgcaggatctggtggtggtcgaggacgattgcggc
acctccaacggcgtggcgatgaaggcgctggtcgaaggcggtgaagtggtcgaggcgctg
cgcgaccggattctcggccgcgtcgccgtggcggacgtcgtcaatccggaaacgcaggaa
acgctgtttgaatcgggcacgctgctcgacgaagacgcggtcgaggacatcgaacgcctg
ggcatcgacgaagtgcgcgtgcgcaccgcgctgacctgcgagacgcgctacggtctgtgc
gcggcctgctatggccgcgatctgggccgcggctcgctcgtgaacgtcggcgaagcggtc
ggcgtgatcgcggcgcagtcgatcggcgagccgggtacgcagctgacgatgcggacgttc
cacatcggtggcgcggcatcgcgtgcggcagtggcgtcgtcggtcgaggcgaagagcaac
ggtacggtgcgcttcaccgcgacgatgcgctacgtgaccaacgcgaagggcgagcagatc
gtcatctcgcgttcgggcgaggcgatgatcaccgacgaattcggccgtgagcgcgagcgt
cacaaggtcccgtacggcgcgacgctgctgcagctcgacggcgcgctgatcaaggcgggc
acgcagctcgccacgtgggatccgctgacgcgtccgatcatcaccgagtacggtggtacg
gtgaagttcgaaaacgtcgaggaaggcgtgacggtcgcgaagcagatcgacgacgtcacg
ggtctgtcgaccctcgtcgtgatcgacgtgaaacgccgcggttcgcaggcggcgaagagc
gtgcgtccgcaggtcaagctgctcgacgcgaacggcgacgaagtgaagatcccgggcacc
gagcatgccgtgcagatcggcttccaggtcggcgcgctgatcaccgtgaaggacggccag
caggtgcaggtgggtgaagtgctcgcacgtatcccgaccgaagcgcagaagacgcgtgac
attaccggcggtctgccgcgggtggcggaactgttcgaagcgcgttcgccgaaggatgcg
ggcattctcgcggaagtcaccggcacgacgtcgttcggcaaggacacgaagggcaagcag
cgtctcgtcatcacggacctcgaaggcaatcagcacgagttcctgatcgcgaaggaaaag
caggtgctggtccacgatgctcaggtcgtcaacaagggcgaaatgatcgtggacggcccg
gccgatccgcacgacatcctgcgtctgcagggtatcgaggcgctgtcgcgctacatcgtc
gacgaagtgcaggacgtgtaccgtctgcagggcgtgaagatcaacgacaagcacatcgag
gtgatcgttcgccagatgctgcgtcgtgtgcagatcaccgacaacggcgatacgcgcttc
atcccgggcgagcaggtcgagcgttcggacatgctggacgaaaacgatcgcatgatcgcg
gaggacaagcgtccggcaacgtacgagaacatcctgctgggtatcacgaaggcgtcgctg
tcgaccgattcgttcatctcggcggcatcgttccaggaaacgacccgcgtgctgaccgaa
gcggcgatcatgggcaagcgcgacgatctgcgcggcctgaaggaaaatgtgatcgtcggt
cgtctgatcccggccggtaccggtcttgcgttccacaaggcgcgcaagaacaaggaaacg
gcggatcgcgagcgtttcgaccagatcgctgcggaagaggcattcgacttcggcacgccg
gaaaccccggccgccgccatcgagccgcagcacccggcggagtaa
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