Burkholderia sp. FERM BP-3421: Bsp3421_006238
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Entry
Bsp3421_006238 CDS
T11127
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
burf Burkholderia sp. FERM BP-3421
Pathway
burf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Bsp3421_006238 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burf03019
]
Bsp3421_006238 (recQ)
03400 DNA repair and recombination proteins [BR:
burf03400
]
Bsp3421_006238 (recQ)
Enzymes [BR:
burf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Bsp3421_006238 (recQ)
Messenger RNA biogenesis [BR:
burf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Bsp3421_006238 (recQ)
DNA repair and recombination proteins [BR:
burf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Bsp3421_006238 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
HRDC
DEAD
RecQ_Zn_bind
Helicase_C
ResIII
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WDD96045
LinkDB
All DBs
Position
1:3344449..3346296
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AA seq
615 aa
AA seq
DB search
MSTALEILNEVFGYPAFRGQQGEIVEHVAGGGDCLVLMPTGGGKSLCYQIPALLRHSAGL
GAGIVVSPLIALMQDQVAAMQEVGVRAAYLNSTLSGAEAAATERALREGELDLLYVAPER
LMTPRFLDLLERARIGLFAIDEAHCVSQWGHDFRPEYIQLSVLHERFPAVPRIALTATAD
AITRDEIVHRLALDDARVFVSSFDRPNIRYRIVEKDNARAQLLDFIRAEHTNADGTTDAG
VVYCLSRRKVEETADWLKTQGVRALPYHAGMEFEVRQRHQAMFQREEGIVMCATIAFGMG
IDKPDVRFVAHLDLPKSVEGYYQETGRAGRDGMPANAWMAYGLGDVVQQRKMIDESEADD
AHKRVQTGKLDALLGLCEAASCRRVRLLSYFGEDSRPCGNCDTCLEPPASWDATREAQMA
LSCVFRAQRASGFNFGASHLIEILRGGRGEKILQRGHEKLSTFGIGAELSEPEWRAIFRQ
LVAFGYLAVDHGGFGALVLTEASKRVLKGEETVTLRRYVKPARSRQSSSRSGTRADPTAG
MNPLERARWEALRAWRAETAKSDGVPAYVIFHDATLAEIARNAPESIEDLRHIPGIGARK
LDRFGDELLEVVESA
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtccaccgctctcgaaattctcaacgaagtcttcggctatccggccttccgtggccag
cagggggaaatcgtcgagcacgtcgcgggcggcggcgattgcctcgtgctgatgccgacg
ggcggcggcaagtcgctgtgctaccagattcccgcgctgctgcgtcacagcgccgggctc
ggcgccggcatcgtcgtctcgccgttgatcgcgctgatgcaggaccaggtggccgcgatg
caggaagtgggggtgcgcgccgcgtatctgaactcgacgctgtcgggcgcggaggccgcg
gccaccgagcgcgcgctgcgcgagggcgaactcgacctgctgtacgtggcgcccgagcgc
ctgatgacgccccgcttcctcgacctgctcgagcgcgcgcggatcggcctgttcgcgatc
gacgaggcgcactgcgtgtcgcagtggggccacgacttccgtcccgaatatatccagctg
tcggtgctgcacgagcgcttcccggccgtgccgcgcattgcgctgacggcgaccgccgac
gcgatcacgcgcgacgagatcgtccatcgcctcgcgctcgacgacgcgcgcgtgttcgtg
tcgagcttcgaccggccgaacatccgctaccggatcgtcgagaaggacaacgcgcgcgcg
cagctgctcgacttcatccgcgcggaacacacgaacgcggacggcacgaccgacgcgggc
gtcgtgtactgcctgtcgcgccgcaaggtcgaggagacggccgactggctcaagacgcag
ggcgtgcgcgcgctgccgtatcacgcggggatggagttcgaggtgcggcagaggcaccag
gcgatgttccagcgcgaggaggggatcgtgatgtgcgcgacgatcgccttcggcatgggg
atcgacaagcccgacgtgcgctttgtcgcgcacctggatctgccgaagagcgtcgagggc
tattaccaggaaaccggccgtgccgggcgcgatggcatgccggcgaacgcatggatggcc
tacgggctcggcgacgtggtgcagcagcgcaagatgatcgacgagtcggaggccgacgat
gcccacaagcgggtccagaccggcaagctcgatgcgctgctcggcctgtgcgaggccgcg
tcctgccggcgcgtgcggctcctcagctatttcggcgaggacagccggccgtgcggcaat
tgcgacacctgcctcgagccgccggcgtcctgggacgcgacccgcgaggcgcagatggcc
ctgtcctgcgtgttccgcgcgcagcgcgcgagcggcttcaatttcggcgccagccacctg
atcgagatcctgcgcggcggccgcggcgagaagatcctgcagcgcggccacgagaaactg
agcacgttcgggatcggcgccgagctttccgaacccgaatggcgcgcgatcttccgccaa
ctggtcgcgttcggctatctcgcggtcgaccacggcggcttcggcgcgctcgtgctcacc
gaagcgagcaagcgggtgctcaagggcgaggagacggtcacgctgcgccgctacgtgaag
ccggcgcgctcgcgtcagtcgtcgagccgcagtggaacgcgcgccgacccgacggcaggc
atgaatccgctcgagcgcgcgcgctgggaggcgctgcgcgcgtggcgcgcagaaaccgcc
aagagcgacggcgtgccggcctacgtgatcttccacgatgcgaccctcgcggaaatcgcg
cgcaacgcgcccgaatcgatcgaggatctgcgccatatccccggtatcggcgcgcgcaag
ctcgaccgtttcggcgacgagctgctcgaagtcgtcgagtcggcctga
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