Burkholderia sp. JP2-270: DM992_05930
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Entry
DM992_05930 CDS
T07766
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
burk
Burkholderia sp. JP2-270
Pathway
burk02020
Two-component system
burk02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
burk00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
DM992_05930
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
DM992_05930
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
burk03021
]
DM992_05930
Transcription machinery [BR:
burk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
DM992_05930
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_38
HTH_Crp_2
HTH_23
DUF444
Motif
Other DBs
NCBI-ProteinID:
AWU99146
LinkDB
All DBs
Position
1:complement(1233454..1234959)
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AA seq
501 aa
AA seq
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MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLENDDEWIVSPLRV
AADGSLIAQTPSGQNTEPAPANNSSTSGDRAERDEPAGADEYDSYASGDGNDGPQWNLDE
FGRSSGASDDDDLPPLQVQEAATSLRDHLSAQLRVTQAGPRDRALVMFLIESLDDDGYLT
ATLDEVLADLPPELEIDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKHLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPD
IIVKKAGQGWLAELNPEVVPRLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQ
RFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLGLHESTVSRVTTGKYMLTPFG
TLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALKIPAVNLRKSL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccagccttcaactccgcctgtcgcaacatctggcgctgacgccgcagctacag
cagtcgatccggctcctgcagttgtcgacgctcgaattgcagcaggaagtcgcgatggca
gtcgcgcagaacccgctgctcgagaacgacgacgaatggatcgtgagcccgctgcgcgtc
gctgcggacggatcgctgatcgcgcagacaccttccggccagaacaccgagccggccccg
gcaaacaacagcagcacgtcgggcgatcgcgcggagcgcgacgaaccggccggcgcggac
gaatacgacagttacgcgtccggcgacggcaacgacggcccgcaatggaatctcgacgaa
ttcggccgctcgagcggagcgtccgacgacgacgacctcccgccgctgcaggtgcaggaa
gccgcgacgtcgctgcgcgaccacctgtccgcgcagttgcgcgtcacgcaggccggcccg
cgcgatcgcgcgctcgtgatgttcctgatcgaatcgctcgacgacgacggctacctgacc
gccacgctcgacgaagtgctcgccgacctgccgcccgagctggagatcgactgcgacgaa
ctgaacgcggcgctcgcgctgctgcacagcttcgacccggccggagtcggcgcccgctcg
gcatcggaatgcctgaagctgcagttgctgcgcctcgatccgtccccgacgcgcacgctc
gcactcgagatcgtgtcgcagcatctggaactgctcgccgcacgcgacttcacgcgattg
cgcaagcacctgaaggcgagcgacgacgcgctgcgagacgcgcacgcgctgatccgctcg
ctcgagccgttccccggcgccgcgtacggcaaggccgaggccgactacgtcgtgcccgac
atcatcgtgaagaaggccggccagggatggctcgcggagctcaatccggaggtcgtgccg
cgcctgcggatcaacaacctctacgcgaacatcctgcgcaacagccgcggcgatccgtcg
accggttcgctgaaacagcagcttcaggaagcacgctggctgatcaagaacatccagcag
cgtttcgacacgatcctgcgtgtcgcgcaggctattgtcgagcgtcaaaagaatttcttt
gcacatggcgaaattgccatgcgccccttggttttgcgggaaatagctgatacgctgggc
ctacacgagtcgactgtcagccgtgtgacaaccgggaagtacatgctgaccccgttcggg
acgcttgaatttaagtacttcttcggatctcacgtttcgaccgacaccggtggcgccgcc
tcgtcgaccgccatccgagccctcatcaagcaactgataggagctgaagacccaaaatcg
ccactttcggacagccgcattgccgagctgctggcagaacagggtttcgtggtcgcgcgc
cgcacggttgccaaatatcgcgaagccctcaagatcccggcagtgaatctgcgcaagtct
ctttag
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