Burkholderia sp. JP2-270: DM992_06625
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Entry
DM992_06625 CDS
T07766
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
burk
Burkholderia sp. JP2-270
Pathway
burk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM992_06625
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burk03019
]
DM992_06625
Enzymes [BR:
burk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DM992_06625
Messenger RNA biogenesis [BR:
burk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DM992_06625
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
P-loop_SecA
Ric8
SNF2-rel_dom
Sacchrp_dh_NADP
Cas3-like_C_2
DegT_DnrJ_EryC1
CARD_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWU99259
LinkDB
All DBs
Position
1:complement(1382682..1384133)
Genome browser
AA seq
483 aa
AA seq
DB search
MSFESLGLAEPLVKAVNELGYTSPTPIQQQAIPAVLGGGDLLAGAQTGTGKTAGFTLPIL
QRLHTFYAEHRGAKRAVRALILTPTRELAAQVEESVRAYSKYLKLRSTVMFGGVSINPQI
DALKRGVDIVVATPGRLLDHMQQKTIDLSDLDILVLDEADRMLDMGFIHDIKRVLAKLPP
QRQNLLFSATFSDEIKALADSLLDSPALIEVARRNTTAESVAQKIHPVDRDRKRELLTHL
IREHNWFQVLVFTRTKHGANRLAEQLTKDGISAMAIHGNKSQSARTRALAEFKNSTLQVL
VATDIAARGIDIDQLPHVVNFDLPNVPEDYVHRIGRTGRAGATGEAVSLVCVDEKQLLRD
IERLIKREIPQEVIPGFEPDPNAKPEPIQQRRGQQQPRGGGGGGGGGGNRQPRASGSGQP
AAKRDGSAQPKASQQKAAKPRTQGGAGSNGGRPAGGGNSARPANGNAAHPNRNRSSRSGQ
RGH
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgtctttcgaatctctcggcctggccgaaccgcttgtcaaggcggtcaacgagctcggc
tacacgtcgccgactccgatccagcagcaggcgatccccgccgtgctcggcggcggcgac
ctgctcgccggcgcacaaacaggcaccggcaagaccgccggcttcacgctgccgatcctg
cagcgcctgcacacgttctacgccgagcatcgcggcgcgaagcgcgcggtgcgcgcgctg
atcctcacgccgacgcgcgaactcgccgcgcaggtcgaggaaagcgtccgtgcctacagc
aagtacctgaagctgcgctcgaccgtgatgttcggcggcgtcagcatcaatccgcagatc
gatgcgctcaagcgcggcgtcgacatcgtcgtcgcgacgccggggcgcctgctcgaccac
atgcagcagaagacgatcgacctgtcggatctcgacatcctcgtgctcgacgaagccgac
cggatgctcgacatgggcttcatccacgacatcaagcgtgtgctcgcgaagctgccgccg
cagcgccagaacctgctgttctcggcaaccttctccgacgagatcaaggcgctcgccgac
agcctgctcgactcgcccgcgctgatcgaggtcgcgcgccgcaacacgaccgccgagagc
gtcgcgcagaagatccatccggtcgaccgcgatcgcaagcgcgaactgctcacgcacctg
atccgcgaacacaactggttccaggtgcttgtgttcacgcgcaccaagcacggcgcgaac
cggctcgccgaacagctgacgaaggacggcatcagcgcgatggcgatccacggcaacaag
agccagtcggcccgcacacgcgcgcttgccgagttcaagaacagcacgctgcaggtgctc
gtcgcgaccgatatcgccgcgcgcgggatcgacatcgaccagttgccgcacgtcgtcaac
ttcgacctgccgaacgtgcccgaggattacgtgcaccggatcggccgcacgggccgcgcg
ggcgcgaccggcgaagccgtgtcgctcgtgtgcgtcgacgagaagcagctgctgcgcgac
atcgagcggctgatcaagcgcgagattccgcaggaagtgatcccgggcttcgaacccgat
ccgaacgcgaagccggagccgatccagcagcgccgtgggcagcagcagccgcgcggcggt
ggcggcggtggcggcggtggcggcaatcgccagccgcgcgcaagcggctcaggccagccg
gccgcgaagcgcgacggcagcgcgcaaccgaaagcatcgcagcagaaggccgcgaagccg
cgcacgcaaggcggtgccggcagcaacggcggacgcccggcgggcggcggcaacagcgcg
cgccccgcgaacggcaacgccgcgcacccgaaccgcaaccgttcgtcgcgcagcggccag
cgcggtcactga
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