Burkholderia sp. JP2-270: DM992_16045
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Entry
DM992_16045 CDS
T07766
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
burk
Burkholderia sp. JP2-270
Pathway
burk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DM992_16045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burk03019
]
DM992_16045
03009 Ribosome biogenesis [BR:
burk03009
]
DM992_16045
Enzymes [BR:
burk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
DM992_16045
Messenger RNA biogenesis [BR:
burk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
DM992_16045
Ribosome biogenesis [BR:
burk03009
]
Prokaryotic type
rRNA processing factors
DM992_16045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AWV00855
LinkDB
All DBs
Position
1:3404489..3407626
Genome browser
AA seq
1045 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMSQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNSGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVPAPAPVAAASGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARPAR
ERTEKTEQRGGDRNRNRRGGAQQAQGGRDQAAAGRGQPQRLEREGKEAREPREGREPREG
REPREGREGREGREGREGREGREGRGQREGREPREPRDSREPREPRENREPRERAEQPEG
VDAAGRGERRERGERRKPTQHAATLETVTRGENHPEPEADKAVAEALPGAELATDAEAGA
RDGEERRRRRRGRRGGRRERDEDGAVVDQAEQGPNGEAAAQAVTPEAPAAAEPAHTAAPA
VVAAVAGAVVVEAAVEQHAAPAVVEAQPAPAHVEAAPAAAVEPAIAVEAAEPAPVAPAVD
TEAGPAPVAVSPTDAFEVPAVPAAAPAAVEAPQSAPVEQAAPAVTTEAAPVAVEPAHVEA
APVEAVAAPAPAPAPAQPAAAPASASLDVVLEQAGLVWVNTDADKFAAAQEAASRLPRPA
RVPRERKVLPPVDTAPMQQVETTHH
NT seq
3138 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgagacagccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcgtcacccgcatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagatcgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcatcgacatgcgctccgcgcgcatccaggatgccctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgccgccctcacgaccttcatctcg
ctcgccggccgctacctggtgctgatgccgaacaatccgcgcggcggtggtgtgtcgcgc
cggatcgagggcgacgagcgccaggaactgcgcgagacgatgtcgcagctgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcag
tgggacctgaactacctgctgcagctgtggcgcgcgatcgaagcggcttcgcaaagcggc
aactccggccagccgatgctgatctacctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaccgagatctacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtgtcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcccgcttccagatcgagcaccagatcgaaacggcctactcg
cgcacggtcccgctgccgtccggcggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgaccaagggcgcggacatcgaggaaacggcgacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctccgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgcgaagtcgag
cagcgcctgaaagacgcgctcaagcacgaccgtgcacgcgtgcagatgggcaagatctcc
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggccctgtcggaaggcagc
cacgtgacctgcccgcgctgtaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcggctgcgccacgacgacgcgcgcctcgacgatccgcgcgcg
tcctggaagatggccgaggaagctgcccgcgaactcgagtcggaaaccggctacagcaag
cgcaccgcagaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgc
ccggccccgagcccggcgccgcaacgcccggtcgagcccgttccggcccccgcaccggtc
gccgcggcaagcggcggcttcatcggctggctgaagggcctgttcggcatgtcgccggct
ccggcgcccgcgccggttgctccggcaccggcgaaggaacaggcggcccgtccggctcgc
gagcgtaccgagaagaccgagcagcgcggcggcgatcgcaaccgcaaccgtcgcggcggc
gcccagcaggcgcaaggcggccgcgaccaggcagcagcaggccgtggtcagccgcaacgc
ctggagcgcgaaggcaaggaagcgcgcgaaccgcgtgaaggccgcgagccgcgcgagggt
cgtgagccgcgtgaaggtcgcgaaggtcgcgaaggtcgtgagggccgcgaaggtcgcgaa
ggtcgcgagggccgtggccagcgcgaaggtcgcgaaccgcgcgagccgcgtgacagccgt
gagccgcgtgaaccgcgcgagaaccgtgaaccgcgcgagcgtgccgagcagccggaaggc
gtcgacgcagcaggccgtggcgagcgtcgcgagcgcggcgaacgtcgcaagccgacccag
catgcggccacgctcgagaccgtcacccgtggcgaaaaccatccggaaccggaagccgac
aaggccgttgcagaagccctgcccggcgccgagctggcaaccgatgcggaagccggcgcg
cgtgacggcgaggaacgtcgccgccgccgtcgcggccgccgcggcggtcgtcgcgagcgc
gacgaagacggcgcagtcgtcgaccaggccgagcaaggcccgaatggcgaagccgcagca
caagccgtgacgccggaagcaccggccgctgccgaaccggcccacacggccgcaccggca
gtcgtcgcggccgtggcaggcgccgtcgtcgtcgaagcagcggtcgagcagcatgctgcg
ccggccgttgtcgaagctcagccggcaccggcacatgtcgaagcggctccggccgctgcg
gtcgagcccgcgatcgccgtcgaggcagcagaaccggcaccggtcgcaccggccgttgac
acggaagccggtccggctccggtcgcggtttcgccgaccgatgcgttcgaagtgccggca
gtaccggcagcagcgccggccgctgtcgaggcgccgcagtccgcgcccgtcgagcaggcc
gcaccggccgtgacgaccgaagccgctccggtggctgtcgagccggcgcatgtcgaagcg
gcaccggtcgaggccgttgcagcaccggcaccggctcctgcccccgcgcaaccggcagcc
gcgcccgcttcggcgagcctggatgtcgtgctggagcaggccggtctcgtctgggtgaac
acggacgccgacaagttcgccgctgcgcaggaagccgcatcgcgcctcccgcgtccggcc
cgcgtgccgcgcgaacgcaaggtgctgccgccggtcgatacggccccgatgcagcaggtc
gaaacgacgcaccactaa
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