Burkholderia sp. MS389: GJG85_05515
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Entry
GJG85_05515 CDS
T10544
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
burm Burkholderia sp. MS389
Pathway
burm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJG85_05515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burm03019
]
GJG85_05515
03009 Ribosome biogenesis [BR:
burm03009
]
GJG85_05515
Enzymes [BR:
burm01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
GJG85_05515
Messenger RNA biogenesis [BR:
burm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GJG85_05515
Ribosome biogenesis [BR:
burm03009
]
Prokaryotic type
rRNA processing factors
GJG85_05515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QRR12888
UniProt:
A0AAQ0CQU4
LinkDB
All DBs
Position
1:complement(1160463..1163645)
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AA seq
1060 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKDGIDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWRAIEAASQSGNAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTNEIHDQ
ARAFMDIVMPDNVAKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAAEVKPKQEAAVKGITPER
PAPSPAPQRPVEPVAAPAPAPVAAASGGFIGWLKGLFGVSPAPAPAPVAPAPAKEQAARP
ARERNEKTEQRGGDRNRNRRGGAQQAQGGRDQAAAGRGQPQRQEREGKEVREPREGREPR
EGRELREGREGRENREGRENREGREGREGRGPREGREPREAREPREPRENREPRERGEQP
EGVEAAGRGERQERGERRERGERRKPTQHAATLETVTRGENHPEPETDKAVAEALPGAEL
AADAEAGARDGEERRRRRRGRRGGRREREEDGSVDQAEQGAEGEVAAQAVTPVAAEPAHT
AAPVVVAAAASAVAVEAVAEQHAAPAAVEAQPAPAHAEAAPAAPVEPVVAVQAAEPAPVA
PAVAEAGPAPVAVSPTDAFEVPAAAPVAVDAPQAAPVAVEAPQAAPVEPAAPAVAIEAAP
VAVEPAPVEAAPVDAAPVEAVAAPAPTPAPAQPAAAPASASLDVVLEQAGLVWVNTDADK
FAAAQEAASRLPRPARVPRERKVLPPADTAPMQQVETTHH
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaggagctgcgcgtcgccatcgtcgat
gggcaaaagctcatcgacatcgacatcgaaaccgccgggcgcgaacagcgcaaaggcaat
atctacaaaggtgtcatcacccgtatcgagccgtcgctcgaagcgtgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggac
ggcatcgacatgcgctccgcgcgcattcaggatgcgctgcgcgaaggccaggagctgatc
gtccaggtcgagaaggaagagcgtggcaacaagggcgccgccctcaccaccttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaatccgcgcggcggcggcgtgtcgcgc
cggatcgaaggcgacgagcgccaggaactgcgcgaaacgatggcgcaactgcagattccg
gacggcatgagcatgatcgcccgtaccgcgggcatcggccgcagcgccgaggaactgcaa
tgggacctgaattacctgctgcaactgtggcgcgcgatcgaagcggcgtcgcaaagcggc
aacgccggccagccgatgctgatctatctggaatcgagcctcgtgatccgcgcgatccgg
gactatttccagcccgatatcggcgaaatcctgatcgacacgaacgaaatccacgatcag
gcccgtgcgttcatggacatcgtgatgccggacaacgtcgcgaaggtgaagcgctaccac
gacgacgtgccgctgttctcgcgtttccagatcgagcaccagatcgaaaccgcgtactcg
cgcacggtgccgctgccgtccggtggcgcgatcgtgatcgaccacaccgaagcgctcgtc
gcgatcgacgtgaactcggcccgcgcgaccaagggcgcggacatcgaggaaacggccacc
cgcacgaacctcgaagcggccgacgaagtcgcccgccagctgcgcctgcgcgacctcggc
ggcctgatcgtgatcgatttcatcgacatggaatcggcgaagagccagcgtgaagtcgag
cagcgcctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcc
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggcgctgtcggaaggcagc
cacgtgacgtgcccgcgctgcaacggcaccggccacatccgcgataccgaatcgtccgcg
ctgcaggtcctgcggatcattcaggaagaagcgatgaaggaaaacaccgcggcgatccac
tgccaggtgccggtcgaggtgaccgccttcctgctgaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcatcgtgctgatcccgaacaagcacctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgacgcgcgcctcgacgatccgcgcgca
tcctggaagatggccgaggaagcggcccgcgagctcgagtcggaaaccggctacagcaag
cgtgcggccgaagtgaagccgaagcaggaagccgcggtcaagggcatcacgcccgagcgt
ccggcaccgagcccggcgccgcagcgtccggtcgaacccgttgcggcccccgccccggcg
cccgtcgccgctgcaagcggcggcttcatcggctggctgaagggcctgttcggcgtgtcg
ccggcaccggcgcccgcaccggtcgcgccagccccggcgaaggagcaggcagcccgcccg
gctcgcgagcgcaacgaaaagacagagcagcgcggcggcgatcgcaaccgcaaccgtcgc
ggcggcgcccagcaggcgcaaggcggccgtgaccaggcagccgccggccgtggccagccg
caacgccaggagcgcgaaggcaaggaagtgcgcgaaccgcgtgaaggccgtgagccgcgc
gagggtcgtgagctgcgtgagggccgcgagggtcgcgaaaaccgcgaaggtcgtgaaaac
cgtgagggtcgcgaaggccgcgagggccgtggcccgcgcgaaggtcgcgagccgcgtgaa
gcccgtgagccgcgcgaaccgcgggaaaaccgcgaaccgcgcgagcgcggcgaacagccg
gaaggcgtcgaagcagccggccgtggcgagcgccaggaacgcggcgagcgtcgcgagcgc
ggcgaacgccgcaagccgacccagcatgcggccacgctcgaaaccgtcacccgcggcgaa
aaccatccggaaccggaaaccgacaaggctgttgcagaagccctgcccggcgcggaactg
gcagccgatgcggaagccggcgcacgtgacggcgaagaacgccgccgtcgccgtcgcggc
cgccgcggcggtcgtcgcgagcgcgaggaagacggctcggtcgaccaggccgagcaaggc
gccgaaggcgaagtcgcggcgcaagccgtgacgccggtcgcggccgaaccggcccacact
gccgcaccggtagtcgtcgcggccgcggccagcgcggtcgccgtggaagccgtcgccgag
cagcatgccgcaccagccgctgtcgaagcgcagccggcgccggcacacgccgaagcggct
ccggccgccccggtcgagcccgtcgtcgccgtccaggcagcagaaccggcaccggtcgca
ccggcggtcgcggaagcgggcccggcgccggtcgcggtatcgccgaccgatgcgttcgaa
gtgccggcggccgctccggtcgctgtcgacgcgccgcaagccgcgccggtcgctgtcgag
gcgccgcaagccgcaccggtcgagccagccgcaccggccgtcgcgatcgaagccgctccg
gtggcagtcgaaccggcaccggtcgaagcagcgcctgtcgacgcagcaccggtcgaggcc
gtcgccgcaccggcaccgacgccggctcccgcacaaccggcagccgcgcccgcttcggcg
agcctggatgtcgtgctggagcaggccggtctcgtctgggtgaacacggacgccgacaag
ttcgcggccgcgcaggaagccgcatcgcgactcccgcgcccggcccgcgtgccgcgcgaa
cgcaaggtgctgccgccggccgatacggccccgatgcagcaggtcgaaacgacgcaccac
tga
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