KEGG   Burkholderia sp. MS389: GJG85_07690
Entry
GJG85_07690       CDS       T10544                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
burm  Burkholderia sp. MS389
Pathway
burm02024  Quorum sensing
burm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:burm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GJG85_07690 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    GJG85_07690 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:burm03019]
    GJG85_07690 (hfq)
   03036 Chromosome and associated proteins [BR:burm03036]
    GJG85_07690 (hfq)
Messenger RNA biogenesis [BR:burm03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     GJG85_07690 (hfq)
Chromosome and associated proteins [BR:burm03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    GJG85_07690 (hfq)
SSDB
Motif
Pfam: Hfq LSM Hfq_1 SelB_WH1 Mucin-like
Other DBs
NCBI-ProteinID: QRR15017
LinkDB
Position
1:complement(1650227..1650796)
AA seq 189 aa
MANPAESHPQNDFINSARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGGGPRGPRTGGRPGGREGGGHSPYGSHGGPRESRGDGGYGSREPR
EGYGSREPREGYGSREPREGYGAPREPRESYGAPRDTGDASGNAAPSDSRGGNGPVIVTR
RRRIVPDGQ
NT seq 570 nt   +upstreamnt  +downstreamnt
atggccaatcccgcagaatcccatccgcaaaacgacttcatcaattcggcgcgcaaggaa
cgtaagcgtgttgaaatctatctcgtcaacggcattcgtctgacgggatgtatcgagtcg
ttcgaccagtatctggtgatgctgcgcacccccgtgggtctgcaaggcatctacaagcgc
gcgatttccacgatccagctcgatacgggcggctcgcgccccggcggcggcggcccccgc
ggcccgcgcaccggcggtcgccccggcggccgtgaaggcggcggtcacagcccgtacggc
tcgcacggcggcccgcgcgaatcgcgcggcgacggcggctacggctctcgcgagccgcgt
gaaggctacggttcgcgcgaaccgcgtgagggttacggctcgcgtgagccgcgcgaaggc
tacggcgctccgcgtgaaccccgcgaaagctacggcgcgccgcgcgacaccggcgacgca
tccggcaacgccgcgccgtcggattcccgcggcggcaacgggccggtcatcgtgacgcgg
cgccggcgaatcgtgccggacggccagtaa

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