Burkholderia sp. MS389: GJG85_11265
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Entry
GJG85_11265 CDS
T10544
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
burm Burkholderia sp. MS389
Pathway
burm03410
Base excision repair
burm03430
Mismatch repair
burm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GJG85_11265 (recJ)
03430 Mismatch repair
GJG85_11265 (recJ)
03440 Homologous recombination
GJG85_11265 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
burm03400
]
GJG85_11265 (recJ)
DNA repair and recombination proteins [BR:
burm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
GJG85_11265 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
GJG85_11265 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GJG85_11265 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Glyco_transf_4
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QRR13953
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All DBs
Position
1:2419582..2421279
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AA seq
565 aa
AA seq
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MTRIVTRPVAPADAEALARHGLHPVLARLYASRGVQSPVDIETALARLVPPTELKGCADA
AVLLADAIADQRRLLVVADYDCDGATACAVAVRGLRMFGAQIDYLVPNRFEYGYGLTPEI
VELAAARKPDLLITVDNGIASVAGVEAANARGIDVLVTDHHLPGDALPAARAIVNPNQPG
CAFPSKHLAGVGVMFYVLLALRAELRRRGAFASKEAEPRLDGLLDLVALGTVADVVRLDG
NNRVLVAQGLQRIRNGRMQPGIAALFRAAAREARTASGFDLGFGLGPRLNAAGRLSDMSL
GIECLITDDIGRAWDLAQQLDVMNRERREIEAGMQQQALADLADVDPADACTITLFNPEW
HQGVIGIVAGRLKEKFHRPSFTFAHADDEGKRVKGSGRSIAGFHLRDALDLVSKREPDLI
VAFGGHAMAAGLTLDTDNVPRFAAAFEAVAREWLSDDALARVIETDGELEDAYFTPQFVG
LLDEAVWGQGFPAPLFSGEFDVVSQSLVKEKHLKLQLARGRQRFNAIWFNHTEPLPASAL
VAYRLVADTWNGVTRVQLIVEHAAG
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgacccggatcgttacccgccccgtcgcgcccgccgacgccgaagcgctcgcgcgccac
ggactgcaccccgtcctcgcgcgcctgtacgcgtcgcgcggcgtgcagtcgcccgtcgac
atcgagaccgcgctcgcgcgcctcgttccgcccaccgagctgaaaggctgcgccgatgcg
gcggtgctgctcgccgacgcgatcgccgaccagcggcgcctgctcgtcgtcgccgactac
gactgcgacggcgcgaccgcctgcgcggtcgcggtgcgcggcctgcggatgttcggcgcg
cagatcgactacctggtgccgaaccgcttcgaatacggctacggcctcacgcccgagatc
gtcgagctcgcggctgcgcgcaagcccgacctgctgatcaccgtcgacaacgggatcgcg
agcgtcgccggcgtcgaagccgcgaacgcgcgcggcatcgacgtgctcgtgaccgaccac
cacctgcccggcgacgcgcttcccgccgcgcgcgcgatcgtcaacccgaaccagcccggc
tgcgcgtttccgagcaagcacctcgccggcgtcggcgtgatgttctacgtgttgctcgcg
ctgcgcgccgagctgcgtcgccgcggcgcgttcgcgagcaaggaagccgagccgcggctc
gacggcctgctcgacctcgtcgcgctcggcaccgtcgccgacgtcgtacggctcgacggc
aacaaccgcgtgctcgtcgcgcaggggctgcagcgcatccgcaacggccgcatgcagccg
ggcatcgccgcgctgttccgcgccgccgcgcgcgaagcgcgcaccgcgtcgggcttcgac
ctcggcttcggcctcggcccgcgcctgaacgcggccgggcggctatccgacatgtcgctc
ggcatcgaatgcctgatcaccgacgacatcggccgcgcgtgggatctcgcgcagcaactc
gacgtgatgaaccgcgaacgccgcgaaatcgaagccggcatgcagcagcaggcgctcgcc
gatctcgccgacgtcgatccggccgacgcgtgcacgatcacgctgttcaatcccgagtgg
caccagggcgtgatcggcatcgtcgccggccggctcaaggaaaagttccaccgtccgtcg
ttcacgttcgcgcacgccgacgacgaaggcaaacgggtcaagggatcgggccggtcgatc
gccggcttccatctgcgcgacgcgctcgacctcgtgtcgaaacgcgaaccggacctgatc
gtcgcgttcggcggccacgcgatggcggccggcctcacgctcgacaccgataacgtgccg
cgcttcgcggccgcgttcgaggccgtcgcgcgcgaatggctgtccgacgacgcactcgcc
cgcgtgatcgagaccgacggcgagctcgaggacgcgtacttcacgccgcagttcgtcggc
ctgctcgacgaggccgtgtgggggcaagggtttccggccccgcttttctcgggcgaattc
gacgtcgtgtcgcagtcgctcgtgaaggaaaagcacctgaagctgcagctggcgcgcggc
cgccagcgcttcaacgcgatctggttcaaccacaccgagccgctgccggcgagtgcgctg
gtcgcgtaccggctcgtcgccgatacgtggaacggcgtcacgcgcgtccagctgatcgtc
gaacacgcggccggctga
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