Burkholderia sp. MS389: GJG85_11465
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Entry
GJG85_11465 CDS
T10544
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
burm Burkholderia sp. MS389
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burm03019
]
GJG85_11465 (hrpA)
Enzymes [BR:
burm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GJG85_11465 (hrpA)
Messenger RNA biogenesis [BR:
burm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
GJG85_11465 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
WHD_HA2
DEAD
AAA_22
NACHT
nSTAND3
nSTAND_NTPase5
T2SSE
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QRR13990
LinkDB
All DBs
Position
1:complement(2467356..2471561)
Genome browser
AA seq
1401 aa
AA seq
DB search
MSNVSKSPAPTRANTPSAKHPDGAADAREQQGQPPRQQQDKPAGKPAPAPRGPRHDERRG
DARQPAAKGAPQATGERAPRRERAARAAVPPNPVPPITYPESLPVSGKRDEIARAIAGHQ
VVIVCGETGSGKTTQLPKICLDLGRGLGAGGTGLIGHTQPRRLAASSTGRRIAEELGTPF
GEVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTLIIDEAHERSLNIDFLL
GYLKEILPRRPDLKLIVTSATIDADRFARHFGTDERPAPVIEVSGRLYPVEMRYRPVAED
RPAVKNAEGTGGRDRVKTAREAERDLMDAIVDAVDELCREGPGDVLVFLPGEREIREAAE
ALRKHHPPHTEILPLFARLSAADQDKVFKASNARRIVLATNVAETSLTVPGIRYVVDTGL
ARVKRYSYRNKVEQLQVESISQAAANQRAGRCGRVADGVCIRLYEESDYQARARFTDPEI
LRSSLASVILRMKSLHLTAIESFPFLEPPPGRAIADGYQLLNELGAVDDDNALTPLGREL
ARLPLDPRVGRMILAARDQQSLREVLIIASALSVQDPRDRPIEAQEQADQAHRRFADERS
EFLQWLKIWAWFEEAVAHKKSNRQLIDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRL
NEAEATYEQIHLALLTGLLGNLGMKADDDPHYLGARGIKFYLWPGSALAKKAGRWVMAAE
LVETSRLYARCLAKIEPEWVEKIGAHLLKKSLSEPHWEKRPAQVSAFERATLYGLPIYHR
RRVAFGKQDPARARELFIRGALVEGEFDTKLPFFAHNRKLLADIEQLEHKSRRQDVLVDD
ELIYAYYDHAIPEGIHTGAAFERWYRDEVKKGGQPDDKQRLLYLSRDDLMRHEAAGVTTD
LFPKRATMAGVEMALTYHFEPGTPRDGVTLAVPLYALNQVDARRCEWLVPGMLKEKVQLL
LKSLPQKLRRHCVPLPEYAAGFVERMGRERFGAGGLVEALIADVRGETQVAMKTADFKLE
TLPAHLFMNFKVIDEHGRQLAMGRNLAQLRQELGAQAQQQFQKIAAASTIATGGDAGAGD
AGDTAAPAAPPGSAARGGKPGKGAAPQTAAPAETGATALYENLTTWNFGKLPELLEIRRR
GQTLYGYPALVDRGTHCDVEVFDSPEEAARIHRAGLRRLFALQLKEPIKFLEKNLPGLRE
MAMQYMSLGTQDELRDQLIDTALDRACLQDPLPDDDASFHARRDEGRSRLNLLAQEIARL
VGQILAEYAGLVKKRAQAKPFAQAHADLQQQLAALVGKRFVIDTPYAQLAHFPRYLKGIA
LRIDKLKADPARDAKQSADLLPLAQQYQRAVSQRGGVADARLAEFRWLLEELRISLFAQE
LRTPMPVSVKRLHKVWESMQR
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtttctaaaagtcccgcgccgacgcgggccaatacgccgtcggcgaagcac
ccggatggtgcggccgatgcgcgcgagcagcagggccagccgccgcgccagcagcaggac
aagccggcgggcaagccggcacccgcgccgcgcgggccgcgccatgacgaacggcgcggc
gacgcgcgccagccggccgcgaagggcgcgccgcaggcaaccggcgagcgcgccccgcgc
cgcgagcgtgcggcgcgcgcggcagtcccgccgaaccccgtcccgccgatcacctacccc
gaaagcctgcccgtgtcgggcaagcgcgacgaaatcgcgcgcgcgatcgccggtcatcag
gtcgtcatcgtctgcggcgaaaccggctcgggcaagaccacgcagttgccgaagatctgt
ctcgatctcggccgcggcctcggcgccggcggcaccggcctgatcggccatacgcagccg
cggcgcctggccgcgtcgtcgaccggccgccgcatcgccgaggaactcggcacgccgttc
ggcgaggtggtcggctacaaggtgcgcttcaccgacaatctcgcgccgggcgcgtccgtg
aagctgatgacggacggcatcctgctcgccgagacgcagaccgatccgctgctgaaagcg
tacgacacgctgatcatcgacgaggcgcacgagcgcagcctgaacatcgactttctgctc
ggctatctgaaggagatcctgccccggcggccggacctgaagctgatcgtcacgtccgcg
acgatcgacgccgatcgcttcgcgcgccatttcggcaccgatgaacgtccggcgcccgtg
atcgaggtgagcgggcggctgtacccggtcgagatgcgctaccggccggtggccgaggat
cgcccggccgtcaagaacgccgaaggcacgggcggccgcgaccgcgtgaagaccgcacgc
gaagccgaacgcgacctgatggacgcgatcgtcgacgcggtcgacgagctgtgccgcgaa
ggccccggcgacgtgctggtgttcctgcccggcgagcgcgagattcgcgaggcggccgag
gcgctgcgcaagcaccatccgccgcatacggagatcctgccgctgttcgcgcggctgtcg
gcggccgaccaggacaaggtgttcaaggcgtcgaacgcgcgccggatcgtgctcgcgacc
aacgtggccgaaacctcgctgacggtgccgggcatccgctacgtggtcgataccggcctt
gcacgcgtgaagcgctattcgtaccggaacaaggtcgagcagttgcaggtcgagtcgatc
tcgcaggccgccgcgaaccagcgcgcgggccgctgcggccgcgtggccgacggcgtgtgc
atccgcttgtacgaggaaagcgactatcaggcgcgtgcgcgcttcaccgatccggaaatc
ctgcgctcgtcgctcgcgtcggtgatcctgcggatgaagtcgctgcacctgaccgcgatc
gaatcgttcccgttcctcgaaccgccgcccggccgcgcgatcgcggacggttatcagttg
ctcaacgagctcggcgcggtcgacgacgacaacgcgctgacgccgctcggccgcgagctc
gcgcggctgccgctcgacccgcgcgtcggccggatgattctcgccgcgcgcgaccagcag
tcgttgcgcgaggtgctgatcatcgcgagcgcgctgtccgtgcaggacccgcgcgaccgc
ccgatcgaagcgcaggagcaggccgaccaggcgcatcgccggttcgcggacgagcgctcc
gaattcctgcagtggctgaagatctgggcgtggttcgaagaggccgtcgcgcacaagaag
tcgaatcgccagctgatcgacgcgtgccggcagaacttcctgtcgcacctgcggctgcgc
gagtggcgcgacgtccattcgcagctgctgacggtggtgcgcgagcacggctggcggctc
aacgaagccgaagccacgtacgagcagattcatctggccctgttgacgggcctgctcggc
aacctcgggatgaaggccgacgacgatccgcattaccttggcgcgcgcggcatcaagttc
tacctgtggccaggctccgcgctcgcgaagaaggccggccgctgggtgatggcggccgag
ctcgtcgagacgagccggctgtacgcgcgctgcctcgcgaagatcgagccggagtgggtc
gagaagatcggcgcgcacctgctgaagaaatcgctgtcggagccgcactgggagaagcgt
ccggcgcaggtcagcgcgttcgagcgcgcgacgctgtacgggctgccgatctaccaccgg
cggcgcgtcgcgttcggcaagcaggacccggcgcgcgcacgcgagctgttcatccgcggc
gcgctggtcgaaggcgaattcgacacgaagctgccgttcttcgcgcacaaccgcaagctg
ctcgccgacatcgagcagctcgagcacaagtcgcgccgccaggacgtgctggtcgacgac
gagttgatctacgcgtactacgaccacgcgatcccggaaggcatccatacgggcgccgcg
ttcgagcgctggtatcgcgacgaggtgaagaagggcggccagcccgacgacaagcagcgg
ctgctgtacctgtcgcgcgacgacctgatgcgccacgaggcggccggcgtgacgaccgac
ctgttcccgaagcgcgcgacgatggccggcgtcgagatggcgcttacgtaccacttcgag
cccggcacgccgcgcgacggcgtgacgctcgcggtgccgctctacgcgctgaaccaggtc
gacgcgcgccgctgcgagtggctggtgcccgggatgctgaaggagaaggtgcaactgctg
ctgaagtcgctgccgcagaagctgcgccggcactgcgtgccgctgcccgagtacgcggcc
ggtttcgtcgagcggatggggcgcgagcgcttcggcgcgggcggcctcgtcgaggcgctg
atcgccgacgtgcgcggcgagacgcaggtcgcgatgaaaacggccgacttcaagctcgag
acgctgcccgcgcacctgttcatgaatttcaaggtgatcgacgagcacggccgccagctc
gcgatggggcgcaatctcgcgcagcttcgccaggagctgggcgcgcaggcgcaacagcag
ttccagaagatcgcggcggcgtcgacgatcgcgaccggcggcgacgcgggcgcgggcgac
gcaggcgacacggccgcgcctgccgccccgccgggttcggcggcgcgaggcggcaagccg
ggcaagggcgcggcgccgcagacggccgccccggccgaaaccggcgcgaccgcgctgtac
gagaacctgacgacgtggaatttcggcaagctgcccgagctgctggaaatccgccggcgc
ggccagacgctgtacggctatccggcgctcgtcgaccgcggcacgcattgcgacgtcgag
gtgttcgattcgccggaggaggccgcgcgcatccaccgggccggcttgcggcggctgttc
gcgctgcagctgaaggagccgatcaagttcctggaaaagaacctgccgggcctgcgcgag
atggcgatgcagtacatgtcgctcggcacgcaggacgagctgcgcgaccagctgatcgac
acggcgctcgaccgcgcatgcctgcaggacccgctgcccgacgacgacgcgagcttccac
gcgcgccgtgacgagggccgcagccgcctgaacctgctcgcgcaggaaatcgcgcggctc
gtcggacagatcctggccgaatacgcggggctcgtgaagaagcgcgcgcaggcgaagccg
ttcgcgcaggcccatgcggacctgcagcagcaactggccgcgctggtcggcaagcgcttc
gtgatcgacacgccttacgcacagcttgcgcatttcccgcgctacctgaagggcatcgcg
ctgcggatcgacaagctgaaggccgatccggcgcgcgacgcgaagcagtcggccgacctg
ctgcccctggcccagcagtaccagcgcgcggtgtctcagcgtggcggcgtcgccgatgcg
cggctcgcggaattccgctggctgctcgaggaactgcggatttcgctgttcgcgcaggaa
ctgcgcacgccgatgccggtctctgtcaagcgtctgcacaaggtctgggagtcgatgcag
cgctag
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