Burkholderia sp. MS389: GJG85_12015
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Entry
GJG85_12015 CDS
T10544
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
burm Burkholderia sp. MS389
Pathway
burm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GJG85_12015 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burm03019
]
GJG85_12015 (pnp)
03016 Transfer RNA biogenesis [BR:
burm03016
]
GJG85_12015 (pnp)
Enzymes [BR:
burm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
GJG85_12015 (pnp)
Messenger RNA biogenesis [BR:
burm03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
GJG85_12015 (pnp)
Transfer RNA biogenesis [BR:
burm03016
]
Prokaryotic type
tRNA degradation factors
GJG85_12015 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
S1_RRP5
KH_2
OB_RRP5_4th
KH-I_KHDC4-BBP
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
QRR14087
LinkDB
All DBs
Position
1:complement(2579565..2581712)
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AA seq
715 aa
AA seq
DB search
MSMFNKVVKEFQWGQHKVRLETGEVARQASGAVIVDVEDTVVLATVVGAKSAKPGQDFFP
LTVDYLEKTYSAGKIPGGFFRREGRPSEHETLTSRLIDRPLRPLFPEGFYNEVQVVIHVL
SVNPEIPADIPALIGASAALAVSGLPFNGPVGAARVAYIDNAYVLNPTRDQLKASSLDLV
VAGTERAVLMVESEADQLSEEVMLGAVVFGHEQMQIAIDAIHELVRDGGKPEWDWQPAPK
NEALIARVTELAQNDLLAAYQLRDKQARSAKLKEVYAATSAKLEEDALAAGTVAADKATV
GNVLFDIEAKIVRSQILNGEPRIDGRDTRTVRPIEIRTGVLPRTHGSALFTRGETQALVV
ATLGTKGDEQIIDALEGEYRERFMLHYNMPPFATGETGRVGSPKRREIGHGRLAKRALVK
CLPSADEFGYSIRVVSEITESNGSSSMASVCGGCLALMDAGVPMKAHVAGIAMGLILEGN
KFAVLTDILGDEDHLGDMDFKVAGTEQGVTALQMDIKIQGITKEIMQVALAQAKEGRMHI
LGKMTSAVSGANTQLSEFAPRMITVKINPEKIRDVIGKGGSVIRALTEETGTTIDISDDG
VVTIASTSSEGMAEAKKRIEQITAEIEVGQVYEGTVLKLLDFGAIVNLLPGKDGLLHISE
IVNERVKDINDYLKEGQQVKVKVIQTDEKGRVRLSAKALLNEAAAAAQSDTPPQQ
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtccatgttcaacaaggtcgtgaaggaattccaatggggccagcacaaggtgcgcctc
gaaaccggtgaagtcgcccgccaggcgagcggcgccgtgatcgtcgacgtcgaagacacc
gtcgtgctggcaaccgtcgtcggcgcgaagtcggcgaagccgggccaggatttcttcccg
ctgaccgtcgactacctcgagaagacctactcggccggcaagattccgggcggcttcttc
cgccgcgaaggccgtccgtcggagcacgagacgctgacgtcgcgcctgatcgaccgtccg
ctgcgcccgctgttcccggaaggcttctacaacgaagtccaggtcgtgatccacgtgctg
tccgtgaacccggaaatcccggcggacatccccgcgctgatcggcgcatcggccgcgctc
gccgtgtcgggcctgccgttcaacggcccggtcggtgccgcgcgtgtcgcatacatcgac
aacgcatacgtgctgaacccgacgcgtgaccagctcaaggcatcgagcctcgacctcgtc
gtcgcgggtacggagcgcgccgtgctgatggtcgagtcggaagccgatcaactgtcggaa
gaagtgatgctgggcgccgtggtgttcggccacgagcagatgcagatcgcgatcgacgcg
atccacgagctggtgcgcgacggcggcaagcccgagtgggactggcagccggcgccgaag
aacgaggcgctgatcgcccgcgtgaccgagctggcgcagaacgatctgctcgccgcttac
cagttgcgcgacaagcaggcgcgttcggcgaagctgaaggaagtctacgcggcgacgtcg
gcgaagctcgaggaagacgcgctggcggccggtacggtcgcggccgacaaggccacggtc
ggcaacgtgctgttcgacatcgaggcgaagatcgtccgttcgcagatcctgaacggcgag
ccgcgcatcgacggccgcgacacgcgcaccgtgcgcccgatcgagatccgcaccggcgtg
ctgccgcgtacccacggctcggcgctgttcacgcgcggcgaaacgcaggcgctggtcgtc
gcgacgctcggcacgaagggtgacgagcagatcatcgacgcgctcgaaggcgaataccgc
gagcgcttcatgctccactacaacatgcccccgttcgcgaccggcgaaacgggccgcgtc
ggctcgccgaagcgtcgcgaaatcggccacggccgtctggccaagcgcgcgctggtcaag
tgcctgccgagcgccgacgaattcggctactcgatccgcgtcgtgtcggaaatcaccgaa
tcgaacggttcgtcgtcgatggcatcggtgtgcggcggctgcctcgcgctgatggacgcc
ggcgtgccgatgaaggcgcacgtcgcgggtatcgcgatgggcctgatcctcgaaggcaac
aagttcgcggtgctgaccgacatcctcggcgacgaagatcacctcggcgacatggacttc
aaggtggccggcaccgagcaaggcgtgacggcactgcagatggacatcaagatccagggc
atcacgaaggaaatcatgcaggtcgcgctcgcgcaggcgaaggaaggccgcatgcacatc
ctcggcaagatgacgtcggcggtgtcgggtgcgaacacgcaactgtcggaattcgcgccg
cgcatgatcacggtcaagatcaacccggaaaagatccgcgacgtgatcggcaagggcggt
tcggtgatccgcgcgctgaccgaggaaacgggcacgaccatcgacatctcggacgacggc
gtcgtgacgatcgcgagcacgagcagcgaaggcatggccgaagcgaagaagcgcatcgag
cagatcacggctgaaatcgaagtcggccaggtgtacgaaggcacggtgctcaagctgctc
gatttcggtgcgatcgtgaacctgctgccgggcaaggacggtctgctgcacatctcggaa
atcgtcaacgagcgtgtgaaggacatcaacgactacctgaaggaaggtcagcaggtgaag
gtcaaggtgatccagacggacgagaagggtcgcgtgcgtctgtcggccaaggcgctgctg
aatgaagcagcggcggcagcgcagtcggatacgccgccgcagcagtaa
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