Burkholderia sp. MS389: GJG85_12330
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Entry
GJG85_12330 CDS
T10544
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
burm Burkholderia sp. MS389
Pathway
burm03030
DNA replication
burm03430
Mismatch repair
burm03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
burm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GJG85_12330 (dnaE)
03430 Mismatch repair
GJG85_12330 (dnaE)
03440 Homologous recombination
GJG85_12330 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
burm03032
]
GJG85_12330 (dnaE)
03400 DNA repair and recombination proteins [BR:
burm03400
]
GJG85_12330 (dnaE)
Enzymes [BR:
burm01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
GJG85_12330 (dnaE)
DNA replication proteins [BR:
burm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
GJG85_12330 (dnaE)
DNA repair and recombination proteins [BR:
burm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
GJG85_12330 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
RecG_wedge
Motif
Other DBs
NCBI-ProteinID:
QRR14148
UniProt:
A0AAQ0CS02
LinkDB
All DBs
Position
1:complement(2643893..2647426)
Genome browser
AA seq
1177 aa
AA seq
DB search
MSDPRFVHLRVHSEFSIADGIVRIDDIVKAAAADGQGALALTDLGNAFGLVRFYQEARGK
GIKPIAGCDVWIANPDDRDKPSRLLLLVKDKVGYLNLCELLSKAWLTNQYRGRAELDASW
LDGELAQGLLALSGAQQGDIGLALAAGNEEAARRHAERWARVFPGGFYIELQRYGQPGAE
AYIQQAATLAASLKLPVVATHPTQFMTDDDFTAHEARVCISEGDILANPRRQKRFTTDQY
FRTQDDMAALFADLPSAIANTVEIAKRCNLKLELGKPKLPLFPTPDGMSLDDYLVQLSKE
GLETRLAQLYPVEAERDAQRDTYYKRLEFECGTITKMGFPGYFLIVADFINWAKNNGVPV
GPGRGSGAGSLVAYALGITDLDPLRYNLLFERFLNPERVSMPDFDIDFCQHGRDRVIQYV
KEKYGADAVSQIATFGTMAAKAAVRDIGRVLDLGYMFTDGVAKLIPFKPGKHVTIADAMK
EEPQLQERYDHEDEVHQLLDLAQRVEGLTRNVGMHAGGVLIAPGKLTDFCPLYTQGDDGG
VVSQYDKDDVEAVGLVKFDFLGLTTLTILDWAERYIRRLDPSKADWSLAQVPLDDPASFQ
ILKKANTVAVFQLESRGMQGMLKDAQPDRFEDIIALVSLYRPGPMDLIPSFCARKHGREK
VDYPDPRVEPVLKETYGIMVYQEQVMQMAQIIGGYSLGGADLLRRAMGKKKPEEMAKHRE
IFAEGAAKNGLTREKSDEIFDLMEKFAGYGFNKSHAAAYALLAYYTAWLKAHHPAEFMAA
NMTLAMDDTDKVKILFDDCVVNNLAVLPPDINQSHYRFEPVAQADGKRSRTIRYGLGAVK
GSGQNAIEEILRAREEKAFTDLFDFCERIDRRVVNRRTVEALIRAGAFDSLNPNRAQLIA
SVPLAMEAADQAEANAMQAGLFDMGAESPHAHALVDEPAWDDKRRLQEEKAALGFYLSGH
LFDAYREEVRRFVRQKVGDLKEGRDKLVAGIIASLRTQMTQRGKMLIALLDDGSGQCEIT
IFNEQFEANKALFKEDELLIVQGQARNDAFTGGIRFTADTVMDLERARSRYAQAVRLTMN
GNADALALRRVLEPHVSNDDPAAANVVEAPAPRGGGRDGGRRPPAPLPNGLAVQIHYSNA
RAQGEMRLGDAWRVKPSDVLLADLRAAFDGSVVEITY
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atgtcagatcctcgcttcgtccatcttcgcgttcactccgaattctcgatcgccgacggc
atcgtgcgcattgacgacatcgtcaaggcggccgccgcggacggtcagggcgcgctcgcg
ctcaccgatctcggcaacgcattcggtctcgtccgtttctaccaggaagcccgcggcaag
ggtatcaagccgatcgccggctgcgacgtctggatagccaatccggacgaccgcgacaag
ccgtcgcggctgctgctgctggtcaaggacaaggtcggttacctgaatctctgcgagctg
ctgtcgaaggcgtggctcacgaaccagtaccgcggccgcgcggaactcgacgcgagctgg
ctcgacggcgagctcgcgcaggggctgctcgcactgtcgggcgcgcagcagggcgatatc
gggctcgcgctggccgcgggcaacgaagaagccgcgcgccgtcacgccgagcgctgggcg
cgggtgtttccgggcggcttctacatcgagctgcagcgttacggccagccgggcgccgag
gcatacatccagcaggccgcgacgctcgccgcgtcgctgaagctgccggtcgtcgcgacg
cacccgacgcagttcatgaccgacgacgatttcaccgcgcacgaggcgcgcgtgtgcatc
tcggaaggcgacatcctcgcgaacccgcggcgccagaagcgtttcacgaccgaccagtat
ttccgcacgcaggacgacatggccgcgctgttcgccgacctgccgtcggcgatcgcgaac
acggtcgagatcgcgaagcgctgcaacctgaagctcgagctcggcaagccgaaactgccg
ctgttcccgacgccggacggcatgtcgctcgacgactacctggtccagctgtcgaaggaa
gggctcgagacccgcctcgcgcagttgtatccggtcgaagccgagcgcgacgcgcagcgc
gacacgtactacaagcgcctcgaattcgagtgcgggaccatcacgaagatgggctttccc
ggctacttcctgatcgtcgcggacttcatcaactgggcgaagaacaacggcgtgccggtc
ggcccgggccgcggctcgggcgccggctcgctggtcgcgtacgcgctcggcatcaccgat
ctcgatccgctgcgctacaacctgctgttcgagcgcttcctgaacccggaacgcgtgtcg
atgcccgacttcgacatcgacttctgccagcacggccgcgatcgcgtgatccagtacgtg
aaggagaaatacggcgcggacgccgtgtcgcagatcgccacgttcggcacgatggccgcg
aaggcggccgtgcgcgacatcggccgcgtgctcgacctcggctacatgttcaccgacggc
gtcgcgaagctgattccgttcaagcccggcaagcacgtgacgattgccgacgcgatgaag
gaagagccgcagctgcaggagcgctacgaccacgaggacgaagtccaccaactgctcgat
ctcgcgcagcgcgtcgagggcttgacgcgtaacgtcgggatgcacgcgggcggcgtgctg
atcgcgcccggcaagctgaccgatttctgcccgctgtacacgcagggcgacgacggcggc
gtggtcagccagtacgacaaggacgacgtcgaagccgtcggcctcgtgaagttcgacttt
ctgggcctcacgacgctgacgatcctcgactgggccgagcgctacatccgccgcctcgat
ccgtcgaaggccgactggtcgctcgcgcaggtgccgctcgacgatccggcgtcgttccag
atcctgaagaaggccaacacggtcgcggtgttccagctggaaagccgcgggatgcagggc
atgctgaaggatgcgcagcccgaccgcttcgaggacatcatcgcgctcgtgtcgttgtac
cgtccgggcccgatggacctgatcccgagcttctgcgcacgcaagcacgggcgcgagaag
gtcgactatccggatccgcgcgtcgaacccgtcctgaaagagacctacggcatcatggtc
tatcaggagcaggtgatgcagatggcgcagatcatcggcggctattcgctcggcggcgcg
gacttgctgcgtcgcgcgatgggcaagaagaagcccgaggagatggccaagcatcgcgag
atcttcgccgagggtgcggcgaagaacggcctcacgcgcgagaaatccgacgagatcttc
gacttgatggagaagttcgcgggctacggcttcaacaagtcgcacgcggccgcgtatgcg
ctgctcgcgtattacaccgcgtggctgaaggcgcaccatccggccgaattcatggcggcc
aacatgacgctcgcgatggacgacaccgacaaggtgaagatcctgttcgacgactgcgtc
gtgaacaacctcgccgtgctgccgccggacatcaaccagtcgcattaccggttcgagccg
gtcgcgcaagccgacggcaagcgctcgcgcacgatccgctacgggctcggcgcggtgaag
ggcagcggccagaacgcgatcgaggaaatcctgcgtgcgcgcgaggaaaaggcgttcacc
gacctgttcgacttctgcgaacggatcgaccggcgcgtcgtcaaccgccgcacggtcgag
gcgctgatccgcgccggcgcgttcgactcgctgaacccgaaccgtgcgcagttgatcgcg
tcggtgccgctcgcgatggaagcggccgatcaggccgaagcgaacgcgatgcaggccggg
ctgttcgacatgggcgccgagtcgccgcatgcgcacgcgctcgtcgacgaacccgcgtgg
gacgacaagcgccgcctgcaggaagaaaaggccgcgctcggcttctacctgtccggtcat
ctgttcgacgcgtatcgcgaagaagtgcgccgcttcgtgcgacagaaggtcggcgacctg
aaggaagggcgcgacaagctcgtcgccggcatcatcgcgtcgctgcgcacgcagatgacc
cagcgcggcaagatgctgatcgcgctgctcgacgacggctccggccagtgcgagatcacg
atcttcaacgaacagttcgaggcgaacaaggcgctgttcaaggaagacgagctgctgatc
gtgcaggggcaggcgcgcaacgacgcgtttaccggcggcatccgcttcaccgccgatacc
gtgatggatctcgaacgtgcccgcagccgctatgcgcaggccgtgcggctgacgatgaac
ggcaacgccgacgcgctcgcgctgcgccgcgtgctcgagccgcacgtgtcgaacgacgat
ccggccgcggcgaacgtggtcgaagcgcccgcgccgcgcggcggggggcgcgatggcggt
cggcgcccgccggcgccgctgccgaacgggcttgccgtccagatccactacagcaacgcg
cgcgcgcaaggcgaaatgcgcctgggcgacgcgtggcgcgtgaagccgagcgacgtgctg
ctggcggatctgcgcgcggcgttcgacggcagcgtcgtcgaaatcacgtactga
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