KEGG   Burkholderia sp. MS389: GJG85_33645
Entry
GJG85_33645       CDS       T10544                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
burm  Burkholderia sp. MS389
Pathway
burm03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:burm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GJG85_33645 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:burm03400]
    GJG85_33645 (ligD)
Enzymes [BR:burm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GJG85_33645 (ligD)
DNA repair and recombination proteins [BR:burm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GJG85_33645 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QRR18333
UniProt: A0AAQ0CWF4
LinkDB
Position
3:complement(888027..890837)
AA seq 936 aa
MAGKLDPYRRKRHFGATPEPEGAHGKRRTKADAKGDTKAGTKPKAKPAARASHPLRFVIQ
EHHARRLHYDFRLELDGTLKSWAVPKGPSFDPQVKRLAVHVEDHPLEYASFEGEIPAGHY
GAGSVVVWDEGTWTPDGGVARAREGYRAGKLSFRLDGEKLHGGWALVRSGRQEGRQEQWL
LIKERDDDARSADEFDVVGERPGSVHAGASNGAARKRAARRGRSTGDAGDGHDARHASDA
SHESHESPRPADPSQVEGAVRAPLPERVGPQLATLVDAPPTHGGWCYELKFDGYRILARI
AGKGARRRVTLTTREGRDWTAKLRAQRDALAALDVDDAWLDGEAVVLGENGLPDFQALQN
AFGADRSDTVTFFVFDLPYLDGYDLRDARLTARRALLEPLLANSDPARVRFSPDLGEDVA
SLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVIGGFTEPSGSRHGFGAL
LLGVHEPAPAGKRRRGPTPLRYVGRVGTGFDARMLDRLAAILRKHERDTMPFDAPPRERT
RTRVHWVEPTLVAECEFAEWTGDGIVRQAAFIALRDDKPAEQIVREMPKHTETEVTMDQR
QTPHDDTRKRASPAARDTADRKRPSRSRAAARAEGDASGPDTLGRVRITHPERVLDPQSG
TRKIDLARYWQWVAPWLLADLKGRPVSLVRAPGDIAGELFFQKHAERREIPFVTQHEGLD
PGHGPLLSIDSVDALLGAAQMGTVELHTWNAHASNIERPDRIVFDLDPDPALPWRTMIDA
AQLVRGLLDELGLVSFCKTSGGKGLHVVVPLTRHAGWDDVKDFSRAVAQHVAGTLPDRFT
ATMGPRHRRGKIFVDYLRNGRGASTIAAYSVRARPGMGVSVPLDWDEVPDTTGGAQWTID
TLHERLDTLKRDPWEGYARTRQRITAAMRARLDAGA
NT seq 2811 nt   +upstreamnt  +downstreamnt
atggccggcaagctcgatccgtatcgccgcaagcgccatttcggcgcaacgcccgagccc
gaaggcgcgcacgggaagcggcgcacgaaggccgatgcgaagggcgacacgaaagcgggc
acgaagccgaaggcgaagcctgccgcgcgcgcaagccatccgctgcgcttcgtgatccag
gagcaccacgcgcgccggctgcactacgacttccggctcgaactcgacggcacgctgaag
tcgtgggccgtgccgaaggggccgagcttcgatccgcaggtgaagcggctcgcggtgcac
gtcgaggaccatccgctcgaatacgcgtcgttcgaaggcgagattccggccgggcattac
ggtgcggggtcggtcgtcgtctgggacgagggcacgtggacgccggacggcggcgttgcg
cgggcacgcgaaggctatcgggccggcaagctgtcgttccggctcgacggcgagaagctg
cacggcggctgggcgctcgtgcgcagcgggcggcaggaagggcgccaggagcagtggctg
ctgatcaaggagcgcgacgacgacgcccgcagcgccgatgaattcgacgtcgtcggcgag
cggccggggagtgtgcacgccggcgcgtcgaacggcgcggcgcgcaagcgcgcggctcgg
cgcggtcgatcgacgggtgacgccggcgatggacatgacgcgcgccacgccagtgacgcc
agccatgaaagccacgaaagcccccgccccgccgatccgtcgcaggtcgaaggcgcggtg
cgtgcgccgctgccggagcgcgtcggcccgcaactcgcgacgctggtcgacgcgccgccg
acccacggcggctggtgctacgaactgaagttcgacggctatcggatcctcgcgcgcatc
gcggggaagggcgctcgccggcgcgtcacgctgacgacgcgcgaaggccgcgactggacc
gcgaagctgcgcgcgcagcgcgacgcgctcgcggcgctcgacgtcgacgacgcatggctc
gacggcgaggccgtcgtgctcggcgagaacggcttgcccgatttccaggcgctgcagaac
gcgttcggcgcggaccgctcggacacggtcaccttcttcgtattcgatctgccttatctc
gacggctacgacctgcgcgacgcgcggctcaccgcgcgtcgcgcgctgctcgaaccgctg
ctcgcgaacagcgacccggcgcgcgtgcgcttttcgcccgatctcggcgaggacgtcgcg
tcgctgatcgcgagcgcgtgcgacaccggcctcgaagggctgatcggcaagcgtgcggac
tcgcgctaccgcgccggtcgttcgcctgcgtggatcaagctcaaatgccgacgtcggcag
gagttcgtgatcggcggctttacggagccgtccggcagccggcacggcttcggcgcgctg
ctgctcggcgtgcacgaaccggcgccggccggcaagcggcggcgcgggccgacgccgctg
cgctacgtcggccgcgtcggcaccggcttcgacgcgcggatgctcgaccgtctcgccgcg
atcctgcgcaagcacgaacgcgacacgatgccgttcgatgcgccgccgcgcgaacgcacg
cgcacgcgcgtgcactgggtcgagccgacgctcgtcgccgaatgcgaattcgcggaatgg
accggcgacgggatcgtgcgacaggccgcgttcatcgcgctgcgcgacgacaagccggcg
gagcagatcgtccgcgaaatgccgaaacacacggaaacggaggtgacgatggatcaacgc
cagaccccgcacgacgacacacgcaagcgcgcatcgcctgccgctcgcgacaccgccgat
cgcaagcgcccgtcacgttctcgtgcagccgcccgcgccgaaggcgacgcgtccggcccc
gacacgctcggccgcgtgcgcatcacgcatcccgagcgcgtgctcgacccgcaaagcggc
acgcgcaagatcgatctcgcgcgttactggcagtgggtcgcgccgtggctgctcgccgac
ctgaaaggccggcccgtatcgctcgtgcgcgcgccgggcgacatcgccggcgagctgttc
ttccagaagcacgcggagcgccgcgagatcccgttcgtcacgcagcacgaagggctcgat
cccggccacgggccgctgctgtcgatcgacagcgtcgatgcgctgctcggcgccgcgcag
atgggcacggtcgagctgcacacgtggaacgcgcacgcgtcgaacatcgagcggccggac
cgcatcgtgttcgacctcgatcccgacccggcgctgccgtggcgcacgatgatcgacgcc
gcgcaactcgtgcgcgggctgctcgacgaactggggctcgtgtcgttctgcaagacgagc
ggcggcaaggggctgcacgtcgtcgtgccgctcacgcggcatgcgggctgggacgacgtg
aaggacttttcgcgcgcggtcgcgcagcacgtcgccggcacgctgcccgaccgtttcacc
gcgacgatggggccgcgccaccggcgcggcaagatcttcgtcgactatctgcgcaacggg
cgcggcgcgagcacgatcgccgcgtattcggtgcgggcgcggcccggcatgggcgtgtcg
gtgccgctcgactgggacgaggtacccgacacgacgggcggcgcgcaatggacgatcgat
acgctgcacgagcggctggacacgctgaagcgcgacccgtgggaaggctatgcgaggacg
cgccagcgcatcaccgcggcgatgcgggcgcggctcgacgccggtgcgtga

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