Burkholderia sp. THE68: BTHE68_08880
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Entry
BTHE68_08880 CDS
T10528
Name
(GenBank) ATP-dependent helicase
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
burt Burkholderia sp. THE68
Brite
KEGG Orthology (KO) [BR:
burt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
burt03019
]
BTHE68_08880
Enzymes [BR:
burt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
BTHE68_08880
Messenger RNA biogenesis [BR:
burt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
BTHE68_08880
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
WHD_HA2
HA2_C
DEAD
AAA_22
NACHT
T2SSE
AAA_23
Gluconate_2-dh3
AAA_19
Motif
Other DBs
NCBI-ProteinID:
BBU27154
LinkDB
All DBs
Position
1:951640..955395
Genome browser
AA seq
1251 aa
AA seq
DB search
MIVSGETGSGKTTQLPKICLALGRGLGAGGSGLIGHTQPRRIAASATGRRIAEELGTPFG
EVVGYKVRFTDNLAPGASVKLMTDGILLAETQTDPLLKAYDTIIIDEAHERSLNIDFLLG
YLKEILPKRPDLKLIVTSATIDAERFARHFGRDDKPAPVIEVSGRLYPVEVRYQPIEEES
EAIKNAQGTLPRRNDRKADRDLMEAIVDAVDDLCRVGPGDVLVFLPGEREIRDTAEALRK
HHPPHTEILPLFARLSAQEQERVFRPSNARRIVLATNVAETSLTVPGIRYVVDTGMARVK
RYSYRNKVEQLQIEPVSQAAANQRAGRCGRVADGVCIRLYDEADFQARPRFTDPEILRSS
LASVILRMKSLHLTEIETFPFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLP
LDPRVGRMILAARDHHALKEVLIIASAVSVQDPRDRPIEAQEQADQAHRQFVDERSEFLQ
WTRIWKWFEDAVAHKKSNKQLADACRANFLSHLRLREWRDVHSQLLTVVREHGWRLNDSD
ATFEQVHLSLLTGLLGNVGLKADDEPHYLGARGIKFHLWPGSALLKKAGRWVMAGELVET
SRLYARTIAKIEPEWLETVGAHLLKKSLSDAHWEKKAAQVVAYERATLYGLTVYARRRVS
YGQQDAKYARELFIRGALVEGEFDTRLPFFAHNRKLVADIEQLEHKSRRQDVLVDDELIY
GYYDSLIPEGMWTGAAFERWYRDEQKKAGNEKLLFLSRDDLMRHEAAGVTTDLFPKRMTM
SGIEMSLTYHFEPGSPRDGVTLAVPLYGLNQVDARRVEWLVPGMIKEKAQLLLKSLPQKL
RRHVVPLPEYAAGFAERHGGPKFGAGALVDSLIADIRAQTQVAVKGADFKLETLPAHLFM
NFKVIDEHGRQLAMGRNLAQLRAELGGQAQQQFQKLTSAAASVALDALSGETSAPPAQPS
GETSSGTALYENLTTWNFGKLPELLEIRRRGQTLFGYPALVDRGTHCDVEVFDSPEEAAR
IHRAGLRRLFALQLREPIRYLEKNLPGLREMSMQYMALGTADELRDQIVDTALDRACLQD
PLPDDDATFHARRDAAKGRLTLLAQEIARLVGTILAEYAALGKKVAQAKSFTSAYADLQA
QLNALIGKRFVIDTPYVQLAHFPRYLKGIALRIDKLKADPARDARLLADLQPLAQHYQRA
MSQRGGVADARLSEYRWLLEELRVSLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
3756 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcagcggcgaaaccggctcgggcaagaccacgcagctcccgaaaatctgcctc
gcgctcggacgcggtctcggcgcgggcggcagcgggctgatcggtcacacgcagccgcgc
cgtatcgccgcttcggccacgggccggcgcatcgcggaggagcttggcacgccgttcggc
gaagtggtcggctacaaggtgcgcttcacggacaatctcgcgccgggcgcgtcggtcaag
ctgatgaccgacggcatcctgctcgcggaaacgcagaccgatccgctgctcaaggcctac
gacacgatcatcatcgacgaggcgcacgaacgcagcctcaacatcgactttctgctcggc
tatctgaaggaaatcctgccgaagcgcccggatctgaagctgatcgtcacgtccgcgacc
atcgacgccgagcgtttcgcgcgccatttcggccgcgacgacaaacccgcgccggtgatc
gaggtgagcgggcggctgtatccggtggaagtgcgctatcagccgatcgaggaagaaagc
gaggcgatcaagaacgcgcaaggcaccctgccgaggcgcaacgaccgcaaggccgatcgc
gatctgatggaagccatcgtcgatgccgtcgacgatctgtgccgcgtcggccccggcgac
gtgctcgtgttcctgcccggcgagcgcgaaatccgcgataccgccgaggcgcttcgcaag
catcacccgccgcatacggaaatcctgccgctcttcgcgcgtctctccgcgcaggagcag
gagcgcgtgttcaggccgtcgaacgcgcggcgcatcgtgctggcgaccaatgtcgcggaa
acctcgctgacggtgccgggcatccgctatgtcgtcgataccggcatggcgcgcgtgaag
cgctattcgtatcgcaacaaggtcgagcagttgcagatcgagccggtgtcgcaggcggcg
gcgaaccagcgcgccggccgctgcgggcgcgtcgcggacggcgtgtgcatccgtctctac
gacgaagcggatttccaggcgcggccgcgcttcaccgatccggaaatcctgcgctcgtcg
ctcgcgtccgtgattctgcggatgaaatcgctgcatctgacggagatcgaaacctttccg
ttcatcgagccgccgccgggacgcgcgatcgcggacggctatcaactgctgaacgaactc
ggcgcggtcgatgacgacaacgcactcacgccgctcggccgcgaactcgcgcgcctgccg
ctcgatccgcgcgtcggccgcatgattctcgccgcgcgcgatcatcacgcgctgaaggaa
gtgctgatcatcgcctcggcggtgtcggtgcaggacccgcgcgaccggccgatcgaggcg
caggagcaggcggatcaggcgcatcggcagttcgtcgacgagcgctccgaattcctgcaa
tggacgcgcatctggaagtggttcgaggacgccgtcgcgcacaagaaatcgaacaagcag
ctcgccgatgcctgtcgcgcgaacttcctgtcgcatctgcggctgcgcgaatggcgcgat
gtgcattcgcaattgctgacagtcgtgcgcgaacacggctggcgtctgaacgattccgat
gcgactttcgagcaagtgcatctgtcgcttttgacgggtctgctcggcaatgtcgggctg
aaagccgacgacgagccgcattatctcggcgcgcgcggcatcaagttccatctgtggccg
gggtccgcgctgctgaagaaagcggggcgctgggtgatggcgggcgaactcgtcgaaacg
agccggctgtacgcgcgcacgatcgcgaagatcgagccggaatggctcgaaacggtcggc
gcgcatctgctgaagaaatcgctgtccgacgcgcactgggagaaaaaggccgcgcaggtc
gtcgcgtacgagcgcgcgacgctctacgggctgacggtctacgcgcgccggcgcgtgagc
tacggccagcaggacgcgaaatatgcgcgcgagctgttcatacgtggcgcgctcgtcgaa
ggcgaattcgacacgcggctgccgtttttcgcgcacaaccgcaagctggtcgccgatatc
gagcaactggagcacaagtcgcgccgccaggacgtgctcgtcgacgatgaactcatctac
ggttactacgattcgctgattcccgaaggcatgtggacgggcgcggcgttcgagcgctgg
tatcgcgatgaacagaagaaggcgggcaacgagaagctgctgttcctctcgcgcgacgac
ctgatgcgccacgaggccgccggcgtcacgaccgatctgttcccgaagcgcatgacgatg
tcgggcatcgagatgtcgctgacctatcacttcgagccgggttcgccgcgcgacggcgtg
acgctcgcggtgccgctgtacggtctcaatcaggtcgatgcgcgccgcgtcgaatggctc
gtgccgggcatgatcaaggagaaggcgcaactgctgctgaagtcgctgccgcagaaactg
cgccggcacgtcgtgccgttgccggaatacgcggcgggtttcgccgaacgtcatggcgga
ccgaagttcggcgcgggcgcgctggtcgactcgctcatcgccgatattcgcgcacagacg
caagtcgccgtgaaaggcgccgatttcaagctggaaacgcttcccgcgcacctgttcatg
aacttcaaggtgatcgacgaacacggccgccagctcgcgatgggccgcaatctcgcgcaa
ctgcgcgcggaactcggcggtcaggcgcagcagcagttccagaagctgacatcggcggct
gcgagcgtcgcgctcgatgcactgtccggagaaacgagcgcgccgccagcgcagccgtcc
ggtgaaacgtcgtccggcaccgcgctctacgaaaatctcacgacgtggaacttcggcaag
ctgcccgaactgctggaaattcgccgacgcggacagacgctgttcggctatccggcgctc
gtcgatcgcggcacgcattgcgacgtcgaagtgttcgattcgcccgaggaagcggcgcgc
atccatcgcgcgggcctgcggcggctattcgcgctgcaactgcgcgagccgatccgctat
ctggagaaaaacctgccgggcctgcgcgaaatgtcgatgcaatacatggcgctcggcacc
gccgacgaactgcgcgatcagatcgtcgacacggcgctcgatcgcgcgtgtctgcaagac
ccgcttcccgacgacgacgctaccttccacgcgcgccgcgacgccgcgaaagggcgtctc
acgctgctcgcgcaggaaatcgcgcggctcgtcggcacgattctggccgaatatgcggcg
ctcgggaaaaaggtggcgcaggcgaaatcgttcacatcggcctatgcggacttgcaggcg
caattgaacgcgctcatcggcaagcgcttcgtcatcgacacgccgtacgtgcaactcgcg
cactttccgcgctatctgaagggaatcgcgctgcgcatcgacaagctcaaggccgatccg
gcccgcgacgcgcgcctgctcgccgatctgcaaccgctcgcgcagcattatcagcgcgcg
atgtcgcaacgcgggggagtcgcggatgcgcgcctgtccgagtatcgatggttgctcgaa
gaactgcgcgtgtcgctgttcgcgcaggaattgcgcacgccgatgccggtttcggtgaaa
cgcctctataaggtctgggaatcgatgcagcgctag
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