Burkholderia mayonis: WS70_05420
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Entry
WS70_05420 CDS
T06044
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
buu
Burkholderia mayonis
Pathway
buu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
WS70_05420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buu03019
]
WS70_05420
03009 Ribosome biogenesis [BR:
buu03009
]
WS70_05420
Enzymes [BR:
buu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
WS70_05420
Messenger RNA biogenesis [BR:
buu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
WS70_05420
Ribosome biogenesis [BR:
buu03009
]
Prokaryotic type
rRNA processing factors
WS70_05420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
AOJ01335
UniProt:
A0A1B4FCD6
LinkDB
All DBs
Position
1:complement(1178853..1182017)
Genome browser
AA seq
1054 aa
AA seq
DB search
MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY
GEDRHGFLPFKEVARQYFKEGVDMRSARIQDALREGQELIVQVEKEERGNKGAALTTFIS
LAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEELQ
WDLNYLLQLWHAIEAASQSGHPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYDQ
ARAFMDIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEALV
AIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVE
QRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSA
LQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFKVGVVLIPNKHLDT
PHYKLERLRHDDARLDDPRASWKMAEEAARELEAETGYSKRAEETKPRQEAAVKGITPER
PAPSPAPQRQPAPEAAPVAVAPASGGFVKWLKNLFGMQPAVAPAPAPAVKEPAARPARER
GERGEKAERGGDRNRNRRGSGGAQQAGGRDQAAAGGGRGQAPRAEREAKETREPREGREA
REGREGREARGGRDNREGREGREARETREPREQREPREPRERAETADAAEAPRSERRERG
ERRKPVPHVATLETVNRGESAHAEPIEQPAHAPGAEAGVEADSNARDGEERRRRRRGRRG
GRREREDETAGAAQAAEASEGATAETAAYAAEAPQGFAPIADHEPQHAGQAGAGVAAVAA
AAVATEAIAHVERGVKVEAQAAAEAPAVSAEPIAAAPARAVEAPAEAAPAATHAEPAPVE
STHEQAAPANAAPAEATPAEAPAAEASEATAPAVAPTPIAKPAPAVVEPQPAPAAVAPAE
ASVAHEPATVAETQAPSAAVAEAVAPAAVAAPSASLETVLESAGLVWVNTDTDKLRAAQA
AAAQIAPPVRAPRERKPLPPVETAPMQQVETTHR
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgctgttcaatgcgacgcagcaggaagaactgcgcgtcgccatcgtcgat
gggcagaagctcatcgacatcgacatcgaaaccgccggacgcgaacaacgcaaaggcaat
atctacaagggcgtcgtcacccgcatcgaaccgtcgctcgaagcctgcttcgtcaactac
ggcgaagaccgccacggcttcctgccgttcaaggaagtcgcccgccagtacttcaaggaa
ggcgtcgacatgcgctccgcgcgcatccaggacgcactgcgcgaaggccaggagctgatc
gtccaggtcgaaaaggaggagcgcggcaacaagggcgcggcgctcaccacgttcatctcg
ctcgccggccgctacctcgtgctgatgccgaacaacccgcgcggcggcggcgtgtcgcgc
cgcatcgagggcgacgagcgccaggagctgcgcgagacgatggcgcagcttcagatcccc
gacggcatgagcatgatcgcccgcacggcgggcatcggccgcagcgccgaggaactgcaa
tgggacctgaactacctgctgcagctctggcacgcgatcgaggcggcgtcgcaaagcggc
catcccggccagccgatgctgatctacctcgaatcgagcctcgtgatccgcgcgatccgg
gactatttccagccggacatcggcgaaatcctgatcgacacgacagagatctacgatcag
gcccgcgcattcatggacatcgtgatgcccgacaacgtcggcaaggtgaagcgctatcac
gacgacgtccccctcttctcgcgcttccagatcgagcaccagatcgagaccgcgtactcg
cgcacggtgccgctgccgtcgggcggcgcgatcgtgatcgatcacaccgaggcgctcgtc
gcgatcgacgtgaactcggcgcgcgcgacgaagggcgcggacatcgaggagacggcgacc
cgcacgaacctcgaagcggccgacgaagtcgcgcgccagctccgtctgcgcgacctgggc
ggcctcatcgtgatcgacttcatcgacatggagtcggcgaagagccagcgtgaagtcgag
cagcgtctgaaggacgcgctcaagcacgaccgtgcgcgcgtgcagatgggcaagatctcg
cgcttcggcctgatggagctgtcgcgccagcgcctgcgcccggcgctgtccgaaggcagc
cacgtcacctgcccgcgctgcaacggcacgggccacatccgcgacaccgaatcgtccgcg
ctgcaagtgctgcggatcattcaggaagaggcgatgaaggagaacaccgcggcgatccac
tgtcaggtgcccgtcgaggtgaccgccttcctgctcaacgaaaagcgtcaggaaatcaac
aagatcgagtcgcgcttcaaggtcggcgtcgtgctgatcccgaacaagcatctcgatacg
ccgcactacaagctcgagcgcctgcgtcacgacgatgcgcgcctcgacgatccgcgcgcc
tcgtggaagatggccgaggaagccgcccgcgagctcgaggcggaaaccggctacagcaag
cgcgccgaggaaacgaagccgcgccaggaagcggccgtcaagggcatcacgcccgaacgc
cccgcaccgagccccgcgccacagcgccagcccgcaccggaggcggcgcccgtggccgtc
gcgccagcaagtggcggcttcgtcaagtggctgaagaacctgttcggcatgcagccggcc
gtggcgcccgcaccggcgcccgctgtcaaggaaccggccgcgcgtccggcgcgcgagcgc
ggtgagcgcggtgagaaggccgagcgcggcggcgatcgcaaccgcaaccgtcgcggcagt
ggcggcgcgcagcaggcaggcggacgcgaccaggccgctgcaggcggcggacgcggtcag
gccccgcgcgccgagcgcgaagccaaggaaacccgcgaaccgcgcgaaggccgcgaggcc
cgagaaggtcgtgaaggtcgtgaagcacgcggcggccgggacaatcgcgaaggccgcgaa
ggccgcgaagcacgcgaaacccgtgagccgcgcgagcaacgtgagccgcgtgagccgcgt
gagcgcgcggagacagccgatgccgctgaagcgccgcgcagcgagcgccgtgaacgcggc
gagcgccgcaagccggtcccgcacgtcgcaacgctcgaaaccgtgaaccgcggcgaaagc
gcccacgcggagccgatcgagcagccggctcatgcgcccggcgcggaagccggcgtcgaa
gcggattcgaacgcccgcgacggcgaggaacgccgccgtcgccgccgcggtcgccgcggt
ggccgccgcgagcgtgaagacgaaaccgcaggcgcagcacaagcggcggaagccagcgaa
ggcgcgacggccgaaacggccgcatacgcagccgaagcgccgcaaggcttcgcgccaatc
gccgaccacgagccgcagcacgccggacaagcgggtgcaggcgtggcggcggttgcggcc
gcggcagtcgccacggaagcgatcgctcacgtcgagcgcggcgtgaaggtcgaggcgcaa
gcggccgccgaagcgcctgccgtttcggccgagccgatcgccgcagcgccggctcgtgcc
gtcgaagcacctgcggaagccgcgccggctgcgacgcatgccgaaccggctccggtcgaa
agcacgcacgagcaagccgctccggccaacgctgctcccgctgaagccacgccggccgaa
gcgcctgccgcggaagcgtccgaagccaccgccccggcggttgctccgaccccgatcgcc
aagccggccccggcagtcgtcgagccgcagcccgcgcccgccgcagtcgcccctgccgag
gcaagcgtcgcgcacgagccggccaccgtcgccgagacacaagcaccgtcggcggccgtc
gccgaggccgtcgcaccggctgcggtagcagccccgagcgcgagcctcgaaacggtgctc
gaatccgccggactcgtctgggtcaacacggacacggacaagctgcgcgcggcgcaagcc
gccgccgcgcagatcgcgccgcccgtccgtgcgccgcgcgaacgcaagccgctgccgccc
gtcgaaacggcgccgatgcagcaagtcgagacgacgcaccgctga
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