Burkholderia mayonis: WS70_06100
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Entry
WS70_06100 CDS
T06044
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
buu
Burkholderia mayonis
Brite
KEGG Orthology (KO) [BR:
buu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buu03019
]
WS70_06100
Enzymes [BR:
buu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
WS70_06100
Messenger RNA biogenesis [BR:
buu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
WS70_06100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
DEAD
AAA_22
NACHT
nSTAND3
T2SSE
AAA_19
AAA_23
PhoH
AAA_25
Motif
Other DBs
NCBI-ProteinID:
AOJ01452
UniProt:
A0A1B4FCX5
LinkDB
All DBs
Position
1:1326621..1330754
Genome browser
AA seq
1377 aa
AA seq
DB search
MSNVPKSPAQKRAGTPGEPRPADAGAGRPPRPVRTAPAQDRAPRAARRESESIPQPARPP
RARVAPNPVPPITFPESLPVSGRRDEIARAIADHQVVIVCGETGSGKTTQLPKICLALGR
GVGAGGAGLIGHTQPRRLAASSTGRRIAEELGTPFGEVVGYKVRFTDNLAPGASVKLMTD
GILLAETQTDPLLTAYDTLIIDEAHERSLNIDFLLGYLKQILPKRPGLKLIVTSATIDAD
RFARHFGSDERPAPVIEVSGRLYPVEVRYRPVADDRPAAVRHAEGAASGRDRAKTAREAE
RDLMDGIVDAVDELCREGPGDVLVFLAGEREIRDAAEALRKHHPPHTEILPLFARLSAAE
QERVFKPSNARRIVLATNVAETSLTVPGIRYVVDTGLARVKRYSYRNKVEQLQIESISQA
AANQRAGRCGRVADGICIRLYEESDFAARVRFTDPEILRSSLASVILRMKSLHLSAIESF
PFIEPPPGRAIADGYQLLNELGAVDDDNALTPLGRELARLPLDPRVGRMILAARDQQALR
EVLVIASALSVQDPRDRPLDAQEQADQAHRRFADERSEFLQWLKIWAWFEEAVAHKKSNR
QLVDACRQNFLSHLRLREWRDVHSQLLTVVREHGWRLSEADATFEQIHLSLLTGLLGNIG
FKAEDEPHYLGARGIKFHLWPGSALVKKAGRWVMAAELVETSRLYARCIAKIEPEWIERI
GAHLLKKSLSEPHWEKRPAQVSAFERATLYGLTVYHRRRVAFGRQDPARARELFIRGALV
GGEFDTKLAFFAHNRKLLADIEQLEHKSRRQDVLVDDELIYAFYDQTVPAGIHTGVAFER
WYRDEVKKSGQPEDKLRLLYLSRDDLMRHEAAGVTTDLFPKRATMAGVEMALSYHFEPGA
PRDGVTLAVPLFALNQVDARRAEWLVPGMLKEKVQLLLKSLPQKLRRHCVPLPEYAAGFV
ERVGAERFGAGGLVEGLIADIRGETQVAMKTPDFKLETLPAHLFMNFKVIDEHGRQLAMG
RNLAQLRAELGAQAQQHFQKIAAAATLAPAGEGAGMAAAAAGARPGARGGASSQAAAQSA
AQAGAGAAEAGATALYENLTTWNFGKLPELLEIRRRGETLFGYPALVDRGAHCDVEVFDS
PEEAARIHRAGLRRLFALQLKEPIKYLEKNLPGLREMAMQYMSLGTQDELRDQLIATALD
RACLQDPLPADDASFHARRNEGKSRLNLLAQEIARLVGQILAEYAGLAKKLAQAKPFPAA
HADMQGQLAALVGKRFVVDTPYAQLAHFPRYLKGVALRIDKLKADPARDARQFAELQPLA
QHCQRAVAQRGGVADARLAEFRWLLEELRISLFAQELRTPMPVSVKRLYKVWESMQR
NT seq
4134 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgtacctaaaagtcccgcgcaaaaacgtgcgggcacgccgggcgagccgcgg
cccgccgacgcgggggcgggccgcccgccgcgtcctgtgcggaccgcgcccgcgcaggac
cgcgcgccgcgcgccgcgcgccgtgaatccgaatccatcccccagcccgcccggccgccg
cgcgcgcgcgtcgcgccgaatcccgttccgccgatcacgtttcccgagagcctgcccgta
tcgggccggcgcgacgagatcgcgcgcgcgatcgccgatcatcaggtcgtgatcgtctgc
ggcgagacgggctcgggcaagacgacccagctcccgaagatctgtctcgcgctcggccgc
ggcgtcggcgcgggcggcgcgggcctgatcggccatacgcagccgcggcggctcgcggcg
tcgtcgacgggacgccgcatcgccgaggagctcggcacgccgttcggcgaagtggtcggc
tacaaggtgcgtttcaccgacaacctcgcgccgggcgcgtccgtcaagctgatgacggac
ggcatcctgctcgccgagacgcagaccgatccgctcctcacggcgtacgacacgctgatc
atcgacgaggcgcacgagcgcagcctcaacatcgatttcctgctcggctatctgaagcag
atcctgccgaagcggccgggcctgaagctgatcgtcacgtcggcgacgatcgacgccgat
cgcttcgcgcgccatttcggcagcgacgagcggcccgcgcccgtgatcgaggtgagcggg
cggctgtatccggtcgaagtccgctaccggccggtcgccgacgaccggccggccgccgtg
cggcacgcggagggcgcggcgtccggccgcgaccgcgcgaagaccgcgcgcgaggcggag
cgcgacctgatggacggcatcgtcgacgcggtcgacgagctgtgccgcgaaggcccgggc
gacgtgctcgtgttcctggccggcgagcgcgagatccgcgacgcggccgaggcgctgcgc
aagcaccatccgccgcacaccgaaatcctgccgctgttcgcgcggctgtcggcggccgag
caggagcgcgtgttcaagccgtcgaacgcgcgccggatcgtgctcgcgacgaacgtcgcc
gagacgtcgctcacggtgccgggcatccgttacgtcgtcgatacgggcctcgcgcgcgtg
aagcgctattcgtatcggaacaaggtcgagcagttgcagatcgaatcgatctcgcaggcg
gccgcgaatcagcgcgcgggccgctgcggccgcgtcgccgacggcatctgcatccgcctc
tatgaagagagcgacttcgccgcccgcgtgcgtttcaccgatccggaaatcctgcgctcg
tcgctcgcgtcggtgattttgcggatgaagtcgctgcatctgtcggcgatcgaatcgttt
ccgttcatcgagccgccgcccggccgcgcgatcgcggacggctaccagttgctgaacgag
ctcggcgcggtcgacgacgacaacgcgctcacgccgctcggccgcgagctcgcgcgcctg
ccgctcgatccgcgcgtcggccggatgattctcgccgcgcgcgaccagcaggcgctgcgc
gaagtgctcgtcatcgcgagcgcgctgtccgtgcaggacccgcgcgatcgcccgctcgac
gcgcaggagcaggccgaccaggcacaccggcgcttcgccgacgagcgctccgaattcctc
cagtggctgaagatctgggcgtggttcgaggaggcggtcgcgcacaagaagtcgaaccgg
cagctcgtcgacgcgtgccggcagaacttcctgtcgcatctgcggctgcgcgaatggcgc
gacgttcactcgcagcttctgaccgttgtgcgcgagcacggctggcggctgagcgaggcc
gatgcgacgttcgagcagatccatctgtcgctgttgacgggccttctcggcaatatcggc
ttcaaggccgaggacgagccgcactacctcggcgcgcgcgggatcaagttccacctgtgg
ccgggttccgcgctcgtgaagaaggcggggcgctgggtgatggcggccgagctcgtcgag
acgagccggctgtacgcgcgttgcatcgcgaagatcgagccggaatggatcgagcggatc
ggcgcgcacctgctgaagaagtcgctgtcggagccgcattgggagaagcgccccgcgcag
gtctccgcgttcgagcgcgcgacgctgtacgggctgaccgtctatcaccggcggcgcgtc
gcgttcggccggcaggacccggcgcgtgcgcgcgagctgttcatccgcggcgcgctcgtc
ggcggcgagttcgacacgaagctcgcgttcttcgcgcacaaccgcaagctgctcgccgac
atcgagcaactcgagcacaagtcgcgccggcaggacgtgctcgtcgacgacgagctgatc
tacgcgttctacgatcagacggttccggcgggcatccacacgggcgtcgcgttcgagcgc
tggtatcgcgacgaggtgaagaagagcggacagccggaagacaagctgcgcctgctgtat
ctgtcgcgcgacgatctgatgcgccacgaggcggccggcgtgacgaccgatctgttcccg
aagcgcgcgacgatggcgggcgtcgagatggcgctgtcctatcacttcgagcccggcgcg
ccgcgcgacggcgtgacgctcgccgtgccgctcttcgcgctgaaccaggtcgacgcacgc
cgcgccgagtggctcgtgccggggatgctgaaggagaaggtgcagttgctgctgaagtcg
ctgccgcagaagctgcgccgccactgcgtgccgctgcccgagtatgcggcgggcttcgtc
gagcgcgtgggcgccgagcgtttcggcgcgggcggcctcgtcgaggggctgatcgccgac
atccgcggagagacgcaggtcgcgatgaagacgcccgatttcaagctcgagacgctgccc
gcgcacctgttcatgaacttcaaggtgatcgacgagcacggccggcagctcgcgatgggg
cgcaatctcgcgcaactgcgtgcggagctgggcgcgcaggcgcagcagcacttccagaag
atcgccgccgccgcgacgcttgcgccggcgggcgagggcgcaggcatggcggctgcggcg
gccggcgcacggccgggcgcgcgcggcggcgcgtcttcgcaagccgccgcccagtccgcg
gcgcaagcgggcgcgggggcggccgaagccggcgcgaccgcgctctacgagaacctgacg
acctggaatttcggcaagctgcccgaactgctcgagatccgccggcgcggcgagacgctg
ttcggctatccggcgctcgtcgatcgcggcgcgcattgcgacgtcgaggtgttcgattcg
cccgaggaggcggcgcggatccaccgcgcgggcctcaggcgcctgttcgcgctgcagttg
aaggagccgatcaagtatctggagaagaacctgccggggctgcgcgagatggcgatgcag
tacatgtcgctcggcacgcaggacgagttgcgcgaccagctgatcgcgacggcgctcgac
cgcgcatgcctgcaggatccgctgcccgccgacgacgcgagcttccacgcgcgccgcaac
gagggcaagagccgcctcaacctgctcgcgcaggagatcgcgcggctcgtcgggcagatc
ctcgccgaatacgcggggctcgcgaagaagctcgcgcaggcgaaaccgtttccggccgcg
cacgcggacatgcagggccagctcgcggcgctcgtcggcaagcgcttcgtcgtcgacacg
ccttacgcgcagcttgcgcacttcccgcgctacctgaagggcgtcgcgctgcggatcgac
aagctgaaggccgatcccgcgcgcgacgcgcgccagttcgccgagctgcagccgctcgcg
cagcactgtcagcgggcggtcgcgcagcgcggcggcgtcgcggacgcgcggctcgccgag
tttcgctggctgctcgaagagctgcggatctcgcttttcgcacaggaactgcgcacgccg
atgccggtgtccgtcaagcggctctacaaagtgtgggagtcgatgcagcgctga
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