Burkholderia mayonis: WS70_23025
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Entry
WS70_23025 CDS
T06044
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
buu
Burkholderia mayonis
Brite
KEGG Orthology (KO) [BR:
buu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
buu03016
]
WS70_23025
Enzymes [BR:
buu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
WS70_23025
Transfer RNA biogenesis [BR:
buu03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
WS70_23025
Prokaryotic type
tRNA splicing ligases
WS70_23025
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AOJ05770
UniProt:
A0A1B4FQ26
LinkDB
All DBs
Position
2:complement(1445084..1446517)
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AA seq
477 aa
AA seq
DB search
MDLTLLKQHGEFEWHIPPTGGMRVPGILYADRKLIGDMDQKVYEQVCNVATLPGIVAASF
AMPDAHWGYGFPIGGVAAFDAQAGGVISAGGVGFDISCGVRTLHTGLARADVDAVKKKLA
DALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGMVPHAKP
SAVSALAKKRQRDEMGTLGSGNHYLEVQEIDDIYDPACAQRYGLRRGQVVVTIHCGSRGL
GHQIGTEFLKEMVIAATSYGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQILT
HLTREVFAKVLPAAQLTLLYDVSHNTCKVEEHVIDGRRRQLYVHRKGATRAFGPGHPALP
DALRDAGQPVLIGGSMGTASYILAGADAAGGERAFGSACHGAGRSMSRFAAARRWRGRAL
VDELASRGILIRSPSDRGVAEEAPGAYKDVGAVVDAAAEAGLARKVARLVPIVCIKG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
atggacctgactctgctgaagcagcacggcgagttcgaatggcacattccgccgacgggc
ggcatgcgcgtgcccggcattctctatgcagaccgcaagctgatcggcgacatggatcag
aaggtatacgagcaggtctgcaatgtcgcgacgctgccgggcatcgtcgccgcgtcgttc
gcgatgccggacgcgcactggggatacggcttcccgatcggcggcgtcgcggcgttcgac
gcgcaagcgggcggcgtgatctcggcgggcggggtcggtttcgacatctcgtgcggcgtg
cgcacgttgcatacggggcttgcgcgcgcggacgtcgatgcagtgaaaaaaaagctcgcc
gatgcgctgttcacgcacatcccggcgggcgtcggcagcaccggtcggctcaggctgtcc
gccgcgaaaacggacgacatgctgacgggcggcgccgcgtgggccgtcaagcagggctac
gggacgccgctcgatctcgaacgcatcgaggagggcggcatggtgccgcacgcgaagccg
tccgcggtgtcggcgctcgcgaagaagcgccagcgcgacgagatgggcacgctcggttcc
ggcaaccactatctcgaagtgcaggaaatcgacgatatatacgatccggcgtgcgcgcag
cgctacggactgcggcgcgggcaagtcgtcgtgacgattcactgcggatcgcgcgggctc
ggtcaccaaatcggcaccgaattcctgaaggagatggtgatcgccgcgacaagctacggc
atcgcgctgcccgaccgcgagctcgcgtgcgcgccgattctgtcggatctcggcgagcgc
tatctgggcgcgatgcgcgcggcgatcaactgcgcgctcgcgaaccgtcagatcctcacg
catctgacccgggaagtgttcgcgaaggtgctgccggccgcgcaactgaccctgctttac
gacgtttcgcacaacacctgcaaggtcgaagagcacgtgatcgacggccgccgccggcag
ctctacgtccatcgcaagggtgcgacgcgcgcgttcgggcccggccatccggcgctgccc
gacgcgctgcgcgacgccggccagccggtgctgatcggcggtagcatgggaacagcgtcg
tacatcctggccggcgcggacgcggcgggcggcgaacgtgcattcggctccgcgtgccac
ggcgcgggccgcagcatgagccgcttcgcggctgcacggcgctggcgcggccgggcgctc
gtcgacgagctcgcgagccgcggcatcctgatccgcagcccgtcggaccgcggcgtcgcc
gaagaggcgccgggcgcgtacaaggatgtcggcgcggtcgtcgacgcggccgccgaggcc
gggctcgcgcgcaaggtcgcgcggctcgtgccgatcgtctgcatcaagggttga
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