Burkholderia sp. MS455: FPJ27_08720
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Entry
FPJ27_08720 CDS
T11444
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
buv Burkholderia sp. MS455
Pathway
buv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
buv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FPJ27_08720 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buv03021
]
FPJ27_08720 (rpoD)
Transcription machinery [BR:
buv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FPJ27_08720 (rpoD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
YuaE
KIND
GSH-S_ATP
DUF7853
Motif
Other DBs
NCBI-ProteinID:
QRR06487
LinkDB
All DBs
Position
2:862009..864426
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AA seq
805 aa
AA seq
DB search
MAKTTGGKKATGKGSTEPTKKVTAAKSASSTRTTSSASSAPAGKKTAAGTAQAAPAPAAR
TRAAARPDSGPAKPAAKRASAKSARDTTAAADETAVRTTHAPTVQPAVVQQPRVDIAGTA
NSMTKKLNEVSVDDDANQSDEQPAAAAAPGKSKVRDRRAKEKALLKEAFATSTPGTAEEL
EERRVKLRALIKLGKERGFLTYAEINDHLPDNFTETEALEGIIGTFNDMGVAVYEQAPDA
ETLLLNDNAPAASSDDEVEEEAEVALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEDGLRHMVMAISACPTTIADILAMAERVANEEIRVDELVDGLLDPNASDSADTDG
FSAKEAEAIENEDEEAEEEEEEEEEEEDDGAAQASANAAQLEALKRASLEKFSQISEWFD
KMRRAFEKEGYKSKAYLKAQETIQTELMTIRFTARTVERLCDTLRAQVDEVRQVERQILH
IVVDKCGMPRSEFIARFPGNETDLDWAEKIMAEGHSYSAVLSRNVPAIREQQQRLLDLQA
RVVLPLKDLKETNRQMAAGELKARQAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGN
IGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQ
ILQETGLEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTV
APADAALHASMRDVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQ
IEAKALRKLRHPSRSDKLKSFLEGN
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagacgacaggcggaaagaaagcaacaggcaagggctcgacggagccgaccaag
aaggtcacagcggccaagtctgcttcttccaccaggacaacgtcttcagcatcgtcagcc
cctgcgggaaagaaaaccgcggccggcaccgctcaggctgcgccggcaccggcagccaga
acacgggctgccgccagacccgactccgggccggccaagccggcagcgaagcgggcaagt
gcgaaaagcgcaagggacacgactgccgccgcggacgaaacggcagtacgtactactcat
gcacccacggttcaaccggctgtcgtccagcagccgcgagtcgatatagccggtacggcg
aactccatgaccaaaaagctgaacgaagtatccgtcgatgacgacgcaaatcagagcgac
gagcagcccgcagccgcggctgcaccgggcaaatccaaggtgcgcgatcgtcgtgccaag
gaaaaggcgctgctgaaggaagcgttcgcgacgagcacgccgggcacggccgaggagctc
gaagagcgccgcgtgaagctgcgcgcgctgatcaagctcggcaaggagcgcggcttcctt
acgtacgccgaaatcaacgatcacctgccggacaacttcaccgagaccgaagccctcgaa
ggcatcatcggcacgttcaacgacatgggcgtggcggtctacgagcaggcgccggacgcg
gaaacgctgctcctgaacgacaacgcgccggccgcgtcgtcggacgatgaagtcgaagag
gaggcggaagtcgcgctgtccaccgtcgattcggaattcggccgcacgaccgatccggtc
cggatgtacatgcgcgaaatgggcacggtcgagctgctcacgcgcgaaggcgaaatcgag
atcgcgaagcggatcgaggacggcctgcgccacatggtgatggcgatttccgcgtgcccg
acgacgatcgccgacatcctcgcgatggccgagcgcgtcgcgaacgaagagatccgcgtc
gacgagctcgtcgacggcctgctcgatccgaatgcttcggactccgccgatacggacggc
ttctccgcgaaggaagcggaagccatcgagaacgaggacgaggaagccgaagaggaagag
gaagaagaggaagaggaggaggatgacggtgccgcacaggcatcggccaacgccgcccag
ctcgaagccctcaagcgtgcctcgctcgagaagttctcgcagatcagcgagtggttcgac
aagatgcgccgcgcgttcgagaaggaaggctacaagtcgaaggcctacctgaaggcgcag
gaaacgatccagaccgaactgatgacgatccgcttcaccgcgcgtaccgtcgaacgcctg
tgcgacacgctgcgtgctcaggtggacgaagtgcgtcaggtcgagcgccagatcttgcac
atcgtcgtcgacaagtgcggcatgccgcgttcggaattcatcgcgcgcttcccgggcaac
gaaaccgacctcgactgggccgagaagatcatggccgaaggccattcgtacagcgcggta
ctgtcgcgtaacgttccggcgatccgcgaacagcagcagcgcctgctcgacctgcaggcg
cgcgtcgtgctgccgctgaaggacctgaaggaaaccaaccgccagatggcggccggcgaa
ctgaaggcacgccaggcgaagcgcgaaatgaccgaggccaacctgcgtctcgtgatctcg
atcgcgaagaagtacacgaaccgcggcctgcagttcctcgacctgatccaggaaggcaac
atcggcctgatgaaggcggtggacaagttcgaataccgccgcggctacaagttctcgacc
tatgcgacgtggtggatccgtcaggccatcacgcgttcgatcgcggaccaggcgcgcacg
atccgtattccggttcacatgatcgagacgatcaacaagatgaaccgcatctcgcggcag
atcctgcaggaaaccggtctcgagccggatccggcaacgctcgccgagaagatggaaatg
ccggaagacaagatccgcaagatcatgaagatcgcgaaggagccgatctcgatggaaacg
ccgatcggtgacgacgacgattcccatctcggcgacttcatcgaggacaccaacacggtc
gcgccggcggatgccgcgctgcatgcaagcatgcgggacgtcgtgaaggacgtgctcgat
tcgctgacgccgcgcgaggcgaaggtgctgcggatgcgcttcggcatcgagatgagcacg
gaccacacgctcgaggaagtcggcaagcagttcgacgtcacgcgcgagcggatccgtcag
atcgaggccaaggcgctgcgcaagctgcgtcacccgagccgttccgacaagctgaagtcg
ttcctcgaagggaactga
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