Burkholderia sp. MS455: FPJ27_21170
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Entry
FPJ27_21170 CDS
T11444
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
buv Burkholderia sp. MS455
Pathway
buv03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
buv00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FPJ27_21170 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
buv03021
]
FPJ27_21170 (rpoB)
03400 DNA repair and recombination proteins [BR:
buv03400
]
FPJ27_21170 (rpoB)
Enzymes [BR:
buv01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FPJ27_21170 (rpoB)
Transcription machinery [BR:
buv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FPJ27_21170 (rpoB)
DNA repair and recombination proteins [BR:
buv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FPJ27_21170 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
UbiD
BSH_YknX
BSH_CzcB
Motif
Other DBs
NCBI-ProteinID:
QRR08830
LinkDB
All DBs
Position
3:319208..323314
Genome browser
AA seq
1368 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADVLATQRKPEGLQAAFTSV
FPIVSHNGFARLEFVSYALSAPAFNIKECQQRGLTYCSALRAKVRLVILDKESPNKPVVK
EVKEQEVYMGELPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMDE
GAQLEFVPERLRGEVARFDITDRDGKVIVQKDKRINAKHIRDLEAAKTKFISVPEDYLLG
RVLAKNVVDGDTGEVIASANDEVTESVLEKLREAGIKDIQTLYTNDLDQGPYISSTLRVD
ETTDRTAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEEAYDLSKVGRMKFNRRVSRDEI
TGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV
VDSKVTDQIDYLSAIEEGRYMIAQANAAIDENGTLIDELVSSREAGETMMVTPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKPVVGTGIERTCAVDSGT
TVQAFRGGVVDYVDAGRIVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIVKMG
DKVSRGDVLADGASTDLGELALGQNMLIAFMPWNGYNFEDSILISEKVVADDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVEGDAFQRLARMLVGKVANGGPKKLAKGTKIDQAYLEDLDHYHWFDIR
LADDEAAAQLEAIKNSIEEKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA
KGLGWRIGEMLQRQAKIEELRVFLTKIYNESGRQEDLESFTDDEILELAKNLREGVPFAT
PVFDGATEEEMGKMLDLAFPDDIAEQLGMNPSKNQVRLYDGRTGEMFERRVTLGYMHYLK
LHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTVK
SDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4107 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagtttcgcgaagcgccccatc
gttcaccaagttcctttcttgctggctacccagcttgaatcattcagcacgtttctgcaa
gccgatgtgctcgcgacgcaacgcaagcctgaaggtttgcaggccgcgttcacatcggta
tttcccattgtttcgcacaacggcttcgcgcgcctcgagttcgtgagctatgcgctgtcc
gcgccggcattcaacatcaaggaatgccagcagcgcggcctgacgtactgctccgcgctg
cgcgcgaaggtccgcctcgtcatcctcgacaaggaatcgccgaacaagccggtcgtcaag
gaagtgaaggagcaggaagtgtacatgggcgaacttccgctcatgacgccgacgggctcg
ttcgtcatcaacggcaccgagcgtgtcatcgtctcgcagctgcaccgttcgccgggcgtg
ttcttcgaacacgacaagggcaagacgcacagctcgggcaagctgctgttctcggcacgg
atcattccgtaccgcggctcgtggctcgacttcgaattcgatccgaaggacatcctgtac
ttccgcgtcgaccgtcgccgcaagatgccggtcacgatcctgctgaaggccatcggcctg
acgccggaacagatcctcgcgaacttcttcgtgttcgacaacttcacgctgatggacgaa
ggcgcgcaactcgagttcgtgcccgagcgtctgcgtggcgaagtcgcgcgtttcgacatc
acggatcgcgatggcaaggtcatcgtccagaaggacaagcggatcaacgcgaagcacatt
cgcgacctcgaagccgcgaagaccaagttcatctcggtgccggaagactatctgctcggc
cgcgtgctggcgaagaacgtcgtcgacggcgataccggcgaagtgatcgcgagcgcgaac
gacgaagtcacggaaagcgtgctcgagaagctgcgcgaagcgggcatcaaggacatccag
acgctctacacgaacgatctggaccagggtccgtacatctcgtcgacgctgcgtgtcgac
gaaacgaccgacaggacggccgcgcgcatcgcgatctaccgcatgatgcgtccgggtgag
ccgccgaccgaagaagcggtcgaggcactgttcaaccgtctgttctacagcgaagaagcg
tatgacttgtcgaaggtcggccgcatgaagttcaaccgccgcgtcagccgtgacgagatc
accggtccgatgacgctgcaggacgacgacatcctcgcgacgatcaagatcctcgtcgag
ctgcgcaacggcaagggcgaagtggacgacatcgaccacctcggcaaccgtcgcgtgcgt
tgcgtcggcgaactggcggaaaaccagttccgcgccggtctcgtgcgcgtcgagcgcgcg
gtcaaggaacgcctcggccaggccgagagcgaaaacctgatgccgcacgacctgatcaac
tcgaagccgatttcgtcggcaattcgcgagttcttcggttcgtcgcagctttcgcagttc
atggaccagaccaacccgctgtcggaaatcacgcacaagcgccgtgtttccgcactgggc
ccgggcggtctgacgcgcgagcgtgcaggcttcgaagtccgcgacgtgcacccgacccac
tacggccgcgtgtgcccgatcgaaacgccggaaggtccgaacatcggcctgatcaactcg
ctcgcactgtacgcgcacctgaacgagtacggcttcctcgagacgccgtaccgcaaggtc
gtggacagcaaggtgaccgaccagatcgactacctgtcggcgatcgaggaaggccgctac
atgatcgcgcaggcgaacgccgcgatcgacgagaacggcacgctgatcgacgaactcgtg
tcgtcgcgcgaagccggcgaaacgatgatggtcacgccggaccgcatccagtacatggac
gtcgcgccgtcgcagatcgtgtcggtcgcagcctcgctgatcccgttcctcgagcacgac
gatgcgaaccgtgcactgatgggctcgaacatgcagcgtcaggccgtgccgtgtctgcgt
ccggaaaagccggtcgttggtacgggcatcgagcgcacctgcgcggttgactcgggcacg
acggttcaggcgttccgcggcggcgtcgtcgactatgtcgacgcaggccgtatcgtgatt
cgcgtgaacgacgacgaagcggtcgcaggtgaagtcggtgtcgacatctacaacctgatc
aagtacacgcgttcgaaccagaacacgaacatcaaccagcgtccgatcgtgaagatgggc
gacaaggtctcgcgcggcgacgtgctggccgacggcgcctcgacggacctgggcgagctc
gcgctcggccagaacatgctgatcgcgttcatgccgtggaacggctacaacttcgaggat
tcgatcctgatctcggagaaggtcgtggccgacgatcgctacacgtcgatccacatcgaa
gagctgaacgtcgttgcacgcgacacgaagctcgggccggaagaaatcacgcgcgacatc
tcgaacctggcggaagtccagctcggccgtctcgacgaatcgggcatcgtgtacatcggt
gctgaagtcgaagcgggcgacgtgctggtcggcaaggtcacgccgaagggcgagacccag
ctgacgccggaagagaagctgctgcgcgcgatcttcggcgagaaggcctcggatgtgaag
gacacgtcgctgcgcgtgccgtcgggcatgagcggtaccgtgatcgacgtccaggtgttc
acgcgtgaaggcatccagcgcgacaagcgtgcgcaacagatcatcgacgacgaactgaag
cgctaccgtctcgacctgaacgaccagctccgcatcgtggaaggcgacgcgttccagcgt
ctcgcgcgcatgctcgtgggcaaggtcgcgaacggcggtccgaagaagctcgcgaagggc
acgaagatcgaccaggcttacctggaagacctcgaccactaccactggttcgacatccgc
ctggcggacgacgaagcagcggcgcagctcgaagcgatcaagaactcgatcgaggaaaag
cgtcaccagttcgacctcgcgttcgaagagaagcgcaagaagctcacgcaaggcgacgaa
ctgccgccgggcgtgctgaagatggtcaaggtgtacctcgcggtgaagcgccgtctgcag
cctggcgacaagatggccggccgtcacggtaacaagggtgtcgtgtcgaagatcgtcccg
atcgaagacatgccgtacatggccgacggccgtccggcagacgtcgtgctgaacccgctc
ggcgtgccgtcgcggatgaacgtgggtcaggttctggaagtgcacctcggctgggccgcg
aagggcctcggctggcgtatcggcgaaatgctgcagcgtcaggcgaagatcgaggaactg
cgcgtgttccttacgaagatctacaacgagtcgggccgccaggaagatctggaaagcttc
accgacgacgagatcctcgaactcgcaaagaacctgcgcgaaggcgtgccgttcgcaacg
ccggtgttcgacggtgcgaccgaggaagaaatgggcaagatgctcgacctcgcgttcccg
gacgacatcgcggaacagctcggcatgaacccgtcgaagaaccaggtccgtctgtacgac
ggccgcacgggtgaaatgttcgaacgtcgcgtgacgcttggctacatgcactacctgaag
ctgcaccacttggtcgacgacaagatgcacgcgcgttcgaccggtccgtactcgctcgtc
acgcagcagccgctgggtggtaaggcgcagttcggtggccagcgtttcggtgaaatggaa
gtgtgggcactcgaagcgtacggcgcgtcctacgtgctgcaggaaatgctgacggtgaag
tcggacgacgtgaccggccggacgaaggtgtacgaaaacctggtcaagggcgatcacgtg
atcgatgcaggcatgccggaatccttcaacgtgctcgtgaaggaaatccgctcgctcggt
atcgatatcgatctcgaccgcaattaa
DBGET
integrated database retrieval system
