Burkholderia sp. MS455: FPJ27_27620
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Entry
FPJ27_27620 CDS
T11444
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
buv Burkholderia sp. MS455
Pathway
buv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
buv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FPJ27_27620 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
buv03019
]
FPJ27_27620 (rnr)
03016 Transfer RNA biogenesis [BR:
buv03016
]
FPJ27_27620 (rnr)
Enzymes [BR:
buv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
FPJ27_27620 (rnr)
Messenger RNA biogenesis [BR:
buv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FPJ27_27620 (rnr)
Transfer RNA biogenesis [BR:
buv03016
]
Prokaryotic type
tRNA degradation factors
FPJ27_27620 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
QRR09981
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Position
3:1658818..1661295
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AA seq
825 aa
AA seq
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MSKYPYPIPSREEILGVLRTSDAPLAANDIAEALSIKRQEREGFFRRVAAMERDGQIRLD
KRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQDDLFLPNGEMQKVMHNDRVLARIVGY
DRRGRPEGHVVEVTERANKRVIGRLLNENGALIVAPEDKRIGHDILITQNVKKARVGQVV
VVDLTDFPSRHSQPLGRVAEVLGDIDDPGMEIEIAVRKYGVPHEFSQSALDEAAALPDKV
RPADLRFRVDLRDVPLVTIDGEDARDFDDAVYCEPVKVGRGDGFRLIVAIADVSYYVQPG
NGLDADALERSTSVYFPRRVIPMLPEKLSNGLCSLNPQVDRCVLACDMVITARGEIKAYQ
FYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAELLPHLQNLYGVYKSLFAARQKRGAID
FDTTETYIVCNSQGKIEQIVPRQRNDAHKLIEECMLAANVCAADFLKRNKHPGLYRVHAG
PTPEKLENLRAFLRGMGLSLGGGDKPHASDYAALMAQIRDRPDAQMLQPMLLRSMQQAVY
SPDNIGHFGLAYEAYAHFTSPIRRYPDLLTHRAIYSILSGKKYVPKAPEGFELNTALSPR
ARAMQQADDEARNRSRSNTAIWEELGLHCSANERRADEASRDVEAWLKCYFMRDKLGEEY
GGMVNGVTSFGIFVQLDTLFIEGLVHVTELGSDYFQYDEIKNELRGERTGIRYRLSDRVR
VQVSRVDLDARKIDFRLVRDTPVKAPRPSPAPAAAGAGAGADRNGPRVRALPQAEELAPR
RKKAASAPSVAVKEARAARKKGGSGGSGGAAAKPTAKKARARKKY
NT seq
2478 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaatatccgtaccccattccgagccgtgaagaaattctcggcgtgctgcgtacg
agcgatgcgccgctggctgccaacgacatcgccgaagcactgtcgatcaagcgtcaggag
cgcgaagggttcttccggcgtgtcgccgcgatggagcgcgacggccagatccgcctcgac
aagcgcggccactaccagttgacccatccgtcgaatttcgtcgcagggcgcgtgcagggg
catcgcgacggctacgggttcgtgatccgcgacgacggtcaggacgacctgtttttgccg
aacggcgaaatgcagaaggtgatgcacaacgaccgcgtgctcgcgcggatcgtcggctac
gatcgccgcggccggccggaagggcatgtcgtcgaagtcaccgagcgcgcgaacaagcgc
gtgatcggccgcctgctcaacgagaacggcgcgctgatcgtcgcgccggaagacaagcgc
atcggccacgacatcctgatcacgcagaacgtgaagaaggcgagggtcgggcaggtcgtc
gtcgtcgatctgaccgatttcccgagccgtcattcgcagccgctcggccgtgtcgccgaa
gtcctcggcgacatcgacgatccgggcatggaaatcgaaatcgcggtgcgcaagtacggc
gtgccgcatgaattcagccagtcggcgctcgacgaagccgccgcgctgcccgacaaggtg
cggccggccgacctgcgcttccgcgtcgacctgcgcgacgtgccgctcgtgacgatcgac
ggcgaggacgcacgcgacttcgacgacgccgtttactgcgagccggtcaaggtcggtcgc
ggcgacggcttccggctgatcgtcgcgatcgccgacgtgtcgtactacgtacagccgggc
aacgggctcgatgccgacgcgctcgagcgcagcacgtcggtctatttcccgcgccgcgtg
atcccgatgctgccggagaagctgtcgaacggcttgtgctcgctgaacccgcaagtcgac
cgctgcgtgctcgcgtgcgacatggtgatcaccgcgcgcggcgagatcaaggcgtaccag
ttctatccggccgtgatccattcggctgcgcgccttacgtacactgaagtggcggccgtg
ctgtcgaacacgaaggggccggaggccgcgcgccgcgcggagctgctaccgcacctgcag
aacctgtacggcgtctacaagtcgctgttcgccgcacggcagaagcgcggcgcgatcgac
ttcgatacgaccgagacctacatcgtctgcaactcgcagggcaagatcgagcagatcgtg
ccgcgccagcgcaacgatgcgcacaagctgatcgaggagtgcatgctggccgcgaacgtc
tgcgcggccgacttcctgaagcgcaacaagcatccgggcctgtaccgcgtgcacgcgggg
ccgacgccggagaagctcgagaacctgcgtgcgttcctgcgcggcatgggcctgtcgctc
ggcggcggcgacaagccgcatgcaagcgactacgcggcgctgatggcgcagatccgcgac
cggcccgacgcgcagatgctgcagccgatgctgctgcgttcgatgcagcaggccgtctac
agcccggacaacatcggccacttcggtctcgcgtacgaggcgtacgcgcacttcacgagc
ccgatccgtcgttatcccgacctgctcacgcaccgcgcgatctattcgatcctgtccggc
aagaagtacgtgccgaaggcgccggagggcttcgagctgaacaccgcgctgtctccgcgc
gcccgcgcgatgcagcaggccgacgacgaagcgcgcaaccgctcgcgctcgaacacggcg
atctgggaagagctcggcctgcactgctcggcgaacgagcggcgtgcggacgaagcgtcg
cgtgacgtcgaggcatggctcaagtgctacttcatgcgcgacaagctcggcgaggaatac
ggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtgcagctcgacacgctgttc
atcgaagggctcgtgcacgtcacggaactcggctcggactacttccagtacgacgagatc
aagaatgagctgcgcggcgaacggacgggcatccgctatcgtctgtcggaccgggtgcgc
gtgcaggtgagccgcgtcgatctcgacgcgcgcaagatcgatttccgcctcgtgcgcgat
acgccggtgaaggcgccgcgcccgtcgcccgcgccggctgctgcaggcgcaggtgccggc
gccgatcgcaacggcccgcgcgtgcgtgcgctgccgcaggcggaagagctcgcgccgcgc
cgcaagaaggccgcaagcgcaccgagcgtcgcggtgaaggaagcacgtgccgcacgcaag
aagggcggcagcggtggcagtggcggtgcggcggcgaagccgaccgcgaagaaggcacgc
gcccgcaagaagtattga
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